View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6524_low_9 (Length: 336)
Name: NF6524_low_9
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6524_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 12344488 - 12344180
Alignment:
| Q |
12 |
tcatcaaagcttgagattgaaaagggcttgaacttgtgttgttggtgttagaaattgaagaaggtgtagtagtagtagtaccatctagaatatgaagatg |
111 |
Q |
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| T |
12344488 |
tcatcaaagcttgtgattgaaaagggcttgaacttgtgttgttggtgttagaaatagaagaaggtgtagtagtagtagtaccatctaaaatatgaagatg |
12344389 |
T |
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| Q |
112 |
atttagattatgattatgattatgaagttgagggaatgacaaaggaggagggttttgataaacaggaattcctctaataggtctaagaaaaccaagttct |
211 |
Q |
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| T |
12344388 |
atttagattatgattatgattatgaagttgagggaatgacaaaggaggagggttttgataaacaggaattcctctaataggtctaagaaaaccaagttct |
12344289 |
T |
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| Q |
212 |
tggcttaagctttggtgttgttgatgtggctggtggtgttgaaagagtggttggggatgggggtgttgaaagtaattattttgatgaaaagattgataag |
311 |
Q |
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| T |
12344288 |
tggcttaagctttggtgttgttgatgtggctggtggtgttgaaagagtggttggggatgggggtgttgaaagtaattattttgatgaaaagattgataag |
12344189 |
T |
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| Q |
312 |
ggttgtttg |
320 |
Q |
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| T |
12344188 |
ggttgtttg |
12344180 |
T |
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