View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6525_high_2 (Length: 466)
Name: NF6525_high_2
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6525_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Original strand, 24164876 - 24165316
Alignment:
| Q |
18 |
acttttgaatcttaaagggagatagttgatgatgtttggtctttgccttgctttcaaccttgctttttctaacaccaccttgtcttaccgcactaagtgc |
117 |
Q |
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| T |
24164876 |
acttttgaatcttaaagggagatagttgatgatgtttggtctttgccttgctttcaaccttgctttttctaacaccgccttgtcttaccgcactaagtgc |
24164975 |
T |
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| Q |
118 |
ttgcttgaattgttcctcttcatattttactggctcaggtgaattcaaatgcaatcttgcattattttcaagggctgcagccattggcattgtgccaaga |
217 |
Q |
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| T |
24164976 |
ttgcttgaattgttcctcttcatattttactggctcaggtgaattcaaatgcaatcttgcattattttcaagggctgcagccattggcattgtgccaaga |
24165075 |
T |
|
| Q |
218 |
aatttgttaacaggcactctagctggaaatggatgctttaatactggttggttgtctattgtgtcgcttttgaccttgttttttatgactgaccctctat |
317 |
Q |
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| T |
24165076 |
aatttgttaacaggcactctagctggaaatggatgctttaatactggttggttgtctgttgtgtcgcttttgaccttgttttttatgactgaccctctat |
24165175 |
T |
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| Q |
318 |
cagtagatgttgatcttctaactggaggcgacggtgatcttccttttcctgagcccgctaacttttcttcggtgagaagggacatttttggcatggactc |
417 |
Q |
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| T |
24165176 |
cggtagatgttgatcttctaactggaggcgacggtgatcttccttttcctgagcccgctaacttttcttcggtgagaagggacatttttggcatggactc |
24165275 |
T |
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| Q |
418 |
cttgtccataaatgccgagggaaaccttgacctcctatgct |
458 |
Q |
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| T |
24165276 |
cttgtccataaatgccgagggaaaccttgacctcctttgct |
24165316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 446
Target Start/End: Original strand, 42232814 - 42233025
Alignment:
| Q |
235 |
tctagctggaaatggatgctttaatactggttggttgtctattgtgtcgcttttgaccttgttttttatgactgaccctctatcagtagatgttgatctt |
334 |
Q |
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|||||||| |||||||| ||| | | ||||||||| |||| ||||| ||||| |||| |||| ||||| || ||||||||||||||| ||||||| |
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| T |
42232814 |
tctagctgtaaatggattcttcgaaattggttggttttctagattgtcgattttggtcttgcttttaatgacagaacctctatcagtagatattgatctc |
42232913 |
T |
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| Q |
335 |
ctaactggaggcgacggtgatcttccttttcctgagcccgctaacttttcttcggtgagaagggacatttttggcatggactccttgtccataaatgccg |
434 |
Q |
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| T |
42232914 |
ctaattggaggtgatggtgacctgcccctccctgtgctcactgacttttcttcagacagaagagacatttttggtatggagtccttgtccataaatgttg |
42233013 |
T |
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| Q |
435 |
agggaaaccttg |
446 |
Q |
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||||||| |||| |
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| T |
42233014 |
agggaaatcttg |
42233025 |
T |
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