View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6525_high_3 (Length: 330)

Name: NF6525_high_3
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6525_high_3
NF6525_high_3
[»] chr4 (13 HSPs)
chr4 (2-312)||(31150979-31151288)
chr4 (61-296)||(31488783-31489018)
chr4 (2-290)||(31529136-31529424)
chr4 (62-296)||(31030416-31030650)
chr4 (62-296)||(31020535-31020769)
chr4 (2-290)||(31159877-31160165)
chr4 (61-291)||(31476203-31476433)
chr4 (84-302)||(31496132-31496350)
chr4 (64-296)||(31501308-31501540)
chr4 (84-218)||(31162338-31162471)
chr4 (109-290)||(31023490-31023670)
chr4 (62-245)||(31482085-31482268)
chr4 (169-290)||(31244241-31244362)
[»] chr6 (11 HSPs)
chr6 (61-292)||(12785602-12785833)
chr6 (61-292)||(12781412-12781643)
chr6 (64-285)||(12782166-12782387)
chr6 (84-293)||(33307172-33307381)
chr6 (84-304)||(33412604-33412824)
chr6 (84-304)||(33265568-33265788)
chr6 (84-304)||(33274712-33274932)
chr6 (66-295)||(33390741-33390970)
chr6 (84-173)||(33288261-33288350)
chr6 (84-304)||(33403297-33403517)
chr6 (264-310)||(9169557-9169603)
[»] chr2 (1 HSPs)
chr2 (84-297)||(17437870-17438083)
[»] scaffold1749 (1 HSPs)
scaffold1749 (113-305)||(861-1053)
[»] scaffold0428 (1 HSPs)
scaffold0428 (113-305)||(9622-9814)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 31150979 - 31151288
Alignment:
Q  2 catcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactgaggaagcatagttctt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150979 catcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactgaggaagcatagttctt 31151078  T
Q  102 agagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151079 agagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaa 31151178  T
Q  202 aaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctcc 301  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151179 aaaatg-attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctcc 31151277  T
Q  302 ttggagatgac 312  Q
    |||||||||||    
T  31151278 ttggagatgac 31151288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 61 - 296
Target Start/End: Complemental strand, 31489018 - 31488783
Alignment:
Q  61 tccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgcta 160  Q
    |||||||||||||| ||||||  ||||||||||||||| || ||||  ||| |||  |||| ||||||  |||||||||| |||| ||| || |||||||    
T  31489018 tccaattctcgcaagcaccaagttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtgcta 31488919  T
Q  161 tggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatc 260  Q
    | ||||||||||| |  |||||||| ||||| || || | |||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||| |||||    
T  31488918 tcgattcacctttttgaagcttagtgtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaaaagatgatcagtaaagttgaagcgagtatc 31488819  T
Q  261 tttacctctaaagctgacaaacacgtcataataatt 296  Q
    || |||||| ||| ||||||||||||||||||||||    
T  31488818 ttcacctctgaaggtgacaaacacgtcataataatt 31488783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 31529136 - 31529424
Alignment:
Q  2 catcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactgaggaagcatagttctt 101  Q
    |||||||||| ||||| ||||||||||||||||| ||||| | ||  ||||| ||| | | |||||| ||||| ||||||  ||||||||||||||| ||    
T  31529136 catcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtt 31529235  T
Q  102 agagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaa 201  Q
     ||||| || ||||  ||| || ||||| |||| || || |||||||||||||||||||| |||||||||||||| |||||||| ||||| || |||| |    
T  31529236 tgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagtgtcatctctaaatgca 31529335  T
Q  202 aaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcata 290  Q
    | ||||| | || |||| ||||| | |||||||||||||||||||||||  ||||| |||   ||||| ||||||| ||||||||||||    
T  31529336 acaatgcctcttatttggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaacacgtcata 31529424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 62 - 296
Target Start/End: Original strand, 31030416 - 31030650
Alignment:
Q  62 ccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctat 161  Q
    ||||||||||||| ||||||  ||||||||||||||| || ||||  ||| |||  |||| ||||||  |||||||||| |||| ||| || |||| |||    
T  31030416 ccaattctcgcaagcaccaagttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtat 31030515  T
Q  162 ggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatct 261  Q
    |||||||||||| |  || ||||| || || || |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||    
T  31030516 ggattcacctttttgaagattagtgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatct 31030615  T
Q  262 ttacctctaaagctgacaaacacgtcataataatt 296  Q
    |  ||||||||| |||||||||| |||||||||||    
T  31030616 tcgcctctaaaggtgacaaacacatcataataatt 31030650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 62 - 296
Target Start/End: Original strand, 31020535 - 31020769
Alignment:
Q  62 ccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctat 161  Q
    ||||||||||||| ||||||  |||||||| |||||| || ||||  ||| |||  |||| ||||||  |||||||||| |||| ||| || |||| |||    
T  31020535 ccaattctcgcaagcaccaagttgaggaagaatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtat 31020634  T
Q  162 ggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatct 261  Q
    |||||||||||| |  || ||||  || || || |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||    
T  31020635 ggattcacctttttgaagattagcgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatct 31020734  T
Q  262 ttacctctaaagctgacaaacacgtcataataatt 296  Q
    |  ||||||||| |||||||||| |||||||||||    
T  31020735 tcgcctctaaaggtgacaaacacatcataataatt 31020769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 31159877 - 31160165
Alignment:
Q  2 catcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactgaggaagcatagttctt 101  Q
    |||||||||| | ||| ||||||||  ||||||| | ||||  ||  ||||| ||| | ||||| |||||||| |||||   ||||||||||||||| ||    
T  31159877 catcatagaaaatagggagaacacgagttccagaaacttgactgcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttt 31159976  T
Q  102 agagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaa 201  Q
     ||||| |  |||| ||||| ||  ||| ||||||||||  ||||||| || |||||||||||||||||||||||||| |||| |||||||||||||| |    
T  31159977 tgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgca 31160076  T
Q  202 aaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcata 290  Q
    |  |||| ||||||||| |||||||||||||||||||| |  || |||  | |||| ||||  ||||||||||| ||||| ||||||||    
T  31160077 acgatgccttttctttgaagggcagcaaaaagatgatcggcaaaattgttgtgtgtgtcttggcctctaaagctcacaaaaacgtcata 31160165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 291
Target Start/End: Complemental strand, 31476433 - 31476203
Alignment:
Q  61 tccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgcta 160  Q
    |||||||||  ||| ||||||  |||| |||| |||||||| || || |||||||| |||| ||||||  ||||||||||  ||| ||||||||||||||    
T  31476433 tccaattctttcaagcaccaagttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgcatgaaagagttcaggtgcta 31476334  T
Q  161 tggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatc 260  Q
    ||||||||||||| |  || ||||| |||||||| |||| |||||  | ||||  ||  |||||| |||||||   ||||||||| |||  ||| |||||    
T  31476333 tggattcacctttttgaagattagtgtcatccctaaatgcaaaaacacctttttcttcgagggcatcaaaaaggaaatcagtgaaattgttgcgagtatc 31476234  T
Q  261 tttacctctaaagctgacaaacacgtcataa 291  Q
    || |||||| ||||| |||||||||||||||    
T  31476233 ttcacctctgaagctcacaaacacgtcataa 31476203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 302
Target Start/End: Complemental strand, 31496350 - 31496132
Alignment:
Q  84 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta 183  Q
    |||| ||||||||||| | || || ||||||||||||| |||||||| ||||||||| | |||||| | |||| ||||||||||||||||    || |||    
T  31496350 tgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagcttaggtcctatggattcaccttttggaagatta 31496251  T
Q  184 gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca 283  Q
    || ||||| || |||| | |||||| || ||| || | || | ||||||||||||||||||| |||  ||| || || | |||||||||| |||||||||    
T  31496250 gtgtcatctctaaatgcagaaatgccttctctgtggaaggtatcaaaaagatgatcagtgaaattgttgcgagtgtcctcacctctaaaggtgacaaaca 31496151  T
Q  284 cgtcataataatttctcct 302  Q
    ||||||||| ||| |||||    
T  31496150 cgtcataatgattgctcct 31496132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 296
Target Start/End: Complemental strand, 31501540 - 31501308
Alignment:
Q  64 aattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatgg 163  Q
    |||||| |||| ||||||| |||||||||||||||| | ||||  ||| |||||||||| | ||| ||||||||||| ||||| || || | ||||||||    
T  31501540 aattcttgcaagcaccaaattgaggaagcatagttccttgagaggaccgcaacaaaaatataagaatcttcaattgcacgaagaagctcggatgctatgg 31501441  T
Q  164 attcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatcttt 263  Q
    ||||||||||    || ||||| |||||||| |||| || ||||| || ||| |  | |||| |||||||||||| |||||| |||  ||| || ||||     
T  31501440 attcaccttttggaagattagtgtcatccctaaatgcaagaatgccttctctgttgaaggcatcaaaaagatgataagtgaaattgttgcgagtgtcttc 31501341  T
Q  264 acctctaaagctgacaaacacgtcataataatt 296  Q
    |||||||||  |||||||| | |||||||||||    
T  31501340 acctctaaaagtgacaaacgcatcataataatt 31501308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 31162338 - 31162471
Alignment:
Q  84 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta 183  Q
    ||||||||||||||||||||| || |||||||  |||||| |||||||| | ||||||| |||||| || | | | |||||||||||||| || ||||||    
T  31162338 tgaggaagcatagttcttagaaaataccacaatgaaaatcagagagtct-cgattgctccaaggagctctgatccaatggattcacctttgttgagctta 31162436  T
Q  184 gtatcatccctgaatgaaaaaatgcattttctttg 218  Q
    | ||||||||| |||| |||||| | |||||||||    
T  31162437 gaatcatccctaaatgcaaaaataccttttctttg 31162471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 290
Target Start/End: Original strand, 31023490 - 31023670
Alignment:
Q  109 accacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgc 208  Q
    ||||||| |||||| |||||| ||||||||||  || |||| |  ||||| ||||||||||||||||| ||| | | ||| ||| |||||| ||  || |    
T  31023490 accacaataaaaat-tgagaggcttcaattgcatgagggagctatggtgcaatggattcacctttcttgagcattgcatcgtccttgaatgcaatgatac 31023588  T
Q  209 attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcata 290  Q
     ||||||| | | || |||||||||||||||| ||||||||  ||| || ||||||||| | ||||| ||||||||||||||    
T  31023589 cttttcttcggaaggaagcaaaaagatgatcaatgaagttgtagcgagtgtctttacctttgaagctcacaaacacgtcata 31023670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 31482268 - 31482085
Alignment:
Q  62 ccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctat 161  Q
    ||||||| ||||| ||||||  ||||||||||||  ||||||| || ||||| |  |||||||||||| |||||||||| |||| |||| | ||| ||||    
T  31482268 ccaattcacgcaagcaccaagttgaggaagcataactcttagacaagaccacgatgaaaatctgagagacttcaattgcacgaaagagtgcgggttctat 31482169  T
Q  162 ggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaa 245  Q
    |||| ||||  | || || |   ||| ||||||||||| |  ||||  ||||||| | |||||| |||||||||||||||||||    
T  31482168 ggatgcaccactgttgagatgtctattatccctgaatgcagcaatgttttttcttcggagggcaccaaaaagatgatcagtgaa 31482085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 31244362 - 31244241
Alignment:
Q  169 cctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctc 268  Q
    |||||||| ||||| |||||||||||||| | || ||||| |||| | || || |   ||||||| ||||||||||| |||  |||||| ||   |||||    
T  31244362 cctttcttgagctttgtatcatccctgaaggtaacaatgccttttttatggagagtgccaaaaaggtgatcagtgaaattgttgcgtgtgtcgccacctc 31244263  T
Q  269 taaagctgacaaacacgtcata 290  Q
    ||||||| |||||||| |||||    
T  31244262 taaagctcacaaacacatcata 31244241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 292
Target Start/End: Original strand, 12785602 - 12785833
Alignment:
Q  61 tccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgcta 160  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||| || ||||   ||| ||||||| |||||||||||| || |||| | |||||||    
T  12785602 tccaattctcgcaaacaccaagttgaagaagcatagttcttagagaatacaacaatgtaaagctgagaggcttcaattgctctaaagagtccgggtgcta 12785701  T
Q  161 tggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatc 260  Q
    || |||||||||| || || ||||| ||||| ||||||| |  ||||| |  |||||| |||||||||||||||||||| ||||| |||| |||||| ||    
T  12785702 tgaattcaccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcaaaaagatgatcggtgaaattgaagcgtgtgtc 12785801  T
Q  261 tttacctctaaagctgacaaacacgtcataat 292  Q
    |   ||||||||||| ||||||||||||||||    
T  12785802 tgggcctctaaagctcacaaacacgtcataat 12785833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 61 - 292
Target Start/End: Original strand, 12781412 - 12781643
Alignment:
Q  61 tccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgcta 160  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| || ||||   ||| ||||||| |||||||||||| || |||| | |||||||    
T  12781412 tccaattctcgcaaacaccaagttgaggaagcatagttcttagagaatacaacaatgtaaacctgagaggcttcaattgctctaaagagtccgggtgcta 12781511  T
Q  161 tggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatc 260  Q
    || |||| ||||| || || ||||| ||||| ||||||| |  ||||| |  |||||| ||||||||| ||| |||||| ||||| |||| |||||| ||    
T  12781512 tgaattcgccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcacaaaaatgatcggtgaaattgaagcgtgtgtc 12781611  T
Q  261 tttacctctaaagctgacaaacacgtcataat 292  Q
    |   ||||||||||| ||||||||||||||||    
T  12781612 tgggcctctaaagctcacaaacacgtcataat 12781643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 64 - 285
Target Start/End: Original strand, 12782166 - 12782387
Alignment:
Q  64 aattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatgg 163  Q
    ||||||||||||||||||  ||| ||||||||||| |||||||| || ||||  |||| ||||||| ||||||||||| ||| ||| || | ||||||||    
T  12782166 aattctcgcaaacaccaagttgaagaagcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatgg 12782265  T
Q  164 attcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatcttt 263  Q
    | | |||||| |  || ||||| ||||| ||||||| |||||| | ||||||||| |||||| ||||||||||||||||||| ||||  ||||| ||| |    
T  12782266 aattacctttttgaagattagtgtcatctctgaatgtaaaaattctttttctttgaagggcaccaaaaagatgatcagtgaaattgaaacgtgtgtctgt 12782365  T
Q  264 acctctaaagctgacaaacacg 285  Q
     ||||| ||||| |||||||||    
T  12782366 gcctctgaagctcacaaacacg 12782387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 293
Target Start/End: Original strand, 33307172 - 33307381
Alignment:
Q  84 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta 183  Q
    |||||||||||||||| | ||||| ||  ||||||||| | ||||  |||| |||||||||||||| |||||| |||| |||||||| || |  || |||    
T  33307172 tgaggaagcatagttccttgagaagactgcaacaaaaacccgagatccttcgattgctcgaaggagctcaggttctatagattcacccttttgaagatta 33307271  T
Q  184 gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca 283  Q
    || |||||||  |||| |||||||| |||| |||  |||||| ||||||||  |||||| ||||||  ||| || |||| |||||| ||| |||||||||    
T  33307272 gtgtcatcccgaaatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtaaagttgttgcgagtgtcttcacctctgaaggtgacaaaca 33307371  T
Q  284 cgtcataata 293  Q
    | ||||||||    
T  33307372 catcataata 33307381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 33412604 - 33412824
Alignment:
Q  84 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta 183  Q
    |||||||||||||||| | || || ||  | || |||| ||||||  |||| ||||| |||||||| |||||| |||||  ||||||||| || || ||     
T  33412604 tgaggaagcatagttccttgaaaagactgcgacgaaaacctgagatccttcgattgcacgaaggagctcaggtcctatgacttcaccttttttaagattt 33412703  T
Q  184 gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca 283  Q
    || |||||||| |||| | |||| | |||  |||  || ||| ||||||||| ||||||||| |||  ||| || |||| |||||| ||| |||||||||    
T  33412704 gtgtcatccctaaatgcataaatacctttggtttcaagtgcatcaaaaagataatcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaaca 33412803  T
Q  284 cgtcataataatttctccttg 304  Q
    | |||||||||||||| ||||    
T  33412804 catcataataatttcttcttg 33412824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 33265568 - 33265788
Alignment:
Q  84 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta 183  Q
    |||||||||||||||  | || || ||| |||||||||  |||||  |||| |||||||||||||| || ||| | ||||||||||||||    || |||    
T  33265568 tgaggaagcatagtttattgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagatta 33265667  T
Q  184 gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca 283  Q
    || ||||||   |||  || ||||| |||| |||| |||||| ||||||||  ||| ||||| |||   || ||||||| |||||| ||| ||||||| |    
T  33265668 gtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaata 33265767  T
Q  284 cgtcataataatttctccttg 304  Q
    | |||||||||||||| ||||    
T  33265768 catcataataatttcttcttg 33265788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 33274712 - 33274932
Alignment:
Q  84 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta 183  Q
    |||||||||||||||  | || || ||| |||||||||  |||||  |||| |||||||||||||| || ||| | ||||||||||||||    || |||    
T  33274712 tgaggaagcatagtttattgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagatta 33274811  T
Q  184 gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca 283  Q
    || ||||||   |||  || ||||| |||| |||| |||||| ||||||||  ||| ||||| |||   || ||||||| |||||| ||| ||||||| |    
T  33274812 gtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaata 33274911  T
Q  284 cgtcataataatttctccttg 304  Q
    | |||||||||||||| ||||    
T  33274912 catcataataatttcttcttg 33274932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 295
Target Start/End: Original strand, 33390741 - 33390970
Alignment:
Q  66 ttctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggat 165  Q
    |||| ||||||||||   |||| ||||||||||  | ||||||||| ||||| ||| ||||||  |||| |||| | |||| ||||||||| ||||||||    
T  33390741 ttcttgcaaacaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacctgagatccttcgattgattgaagaagttcaggtcctatggat 33390840  T
Q  166 tcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttac 265  Q
    |||||||| |  || ||  | | |||||  |||  || ||||| |||| ||| ||||||| ||||||||  |||| |||| |||  ||| || |||| ||    
T  33390841 tcacctttttgaagatttctgttatcccgaaatacaagaatgccttttgtttccagggcatcaaaaagaaaatcaatgaaattgttgcgagtgtcttcac 33390940  T
Q  266 ctctaaagctgacaaacacgtcataataat 295  Q
    |||  ||| |||||||||| ||||||||||    
T  33390941 ctcggaaggtgacaaacacatcataataat 33390970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 33288261 - 33288350
Alignment:
Q  84 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcaccttt 173  Q
    |||||||||||||||  | ||||| ||  |||| |||| ||| ||  |||| |||||||||||||| |||||| ||||||||||||||||    
T  33288261 tgaggaagcatagtttcttgagaatactgcaacgaaaacctgggatccttcgattgctcgaaggagctcaggtcctatggattcaccttt 33288350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 33403297 - 33403517
Alignment:
Q  84 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta 183  Q
    |||||||||||||||| | || || || ||||| |||| |||| |  |||  ||||||||||| || || ||| ||| ||||||||| |  |  || |||    
T  33403297 tgaggaagcatagttccttgaaaagacgacaacgaaaacctgaaatcctttgattgctcgaagaagctcgggttctaaggattcaccctgttgaagatta 33403396  T
Q  184 gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca 283  Q
    || ||||| |  |||| |||||||| |||| |||  |||||| ||||||||  ||||||||| |||   || || |||| |||||||||| ||| |||||    
T  33403397 gtgtcatctcgaaatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttccgagtgtcttcacctctaaaggtgataaaca 33403496  T
Q  284 cgtcataataatttctccttg 304  Q
    | || ||||||||||| ||||    
T  33403497 catcgtaataatttcttcttg 33403517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 9169557 - 9169603
Alignment:
Q  264 acctctaaagctgacaaacacgtcataataatttctccttggagatg 310  Q
    |||||||||| ||| |||||| ||||||| |||||||||||||||||    
T  9169557 acctctaaaggtgaaaaacacatcataatgatttctccttggagatg 9169603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 297
Target Start/End: Complemental strand, 17438083 - 17437870
Alignment:
Q  84 tgaggaagcatagt-tcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctt 182  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||||  |||| ||||||||||| || |||| | |||||||||||||||| |  || ||    
T  17438083 tgaggaagcatagtatctt-gagaaaaccgcaacaaaaacctgagatccttctattgctcgaagaagctcagatcctatggattcacctttttgaagatt 17437985  T
Q  183 agtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaac 282  Q
    ||| ||||| |  |||| |||||||  ||||||||  |||||  ||||||||  ||||||||| |||  ||| ||||||| |||||||||| ||||||||    
T  17437984 agtgtcatctcgaaatgcaaaaatgtcttttctttcaagggcgtcaaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaac 17437885  T
Q  283 acgtcataataattt 297  Q
    || ||||||| ||||    
T  17437884 acatcataatgattt 17437870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 861 - 1053
Alignment:
Q  113 caacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattt 212  Q
    |||| |||| ||||||  |||| |||| ||||||||| |||||| ||||||||||||| ||    || || || ||||||||||| | | |||| | |||    
T  861 caacgaaaacctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaaagcataaataccttt 960  T
Q  213 tctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttgg 305  Q
    |||||  |||||||||||||||  || |||||| |||  ||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||    
T  961 tctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttgg 1053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 9622 - 9814
Alignment:
Q  113 caacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattt 212  Q
    |||| |||| ||||||  |||| |||| ||||||||| |||||| ||||||||||||| ||    || || || ||||||||||| | | |||| | |||    
T  9622 caacgaaaacctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaaagcataaataccttt 9721  T
Q  213 tctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttgg 305  Q
    |||||  |||||||||||||||  || |||||| |||  ||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||    
T  9722 tctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttgg 9814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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