View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6525_high_8 (Length: 264)
Name: NF6525_high_8
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6525_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 13587130 - 13587368
Alignment:
| Q |
11 |
gggaatatggaacgttcgttgtttgtttgattttttcttttggattggattt-acacccgacgttgtaactaacacaatttcgataaaaggttattgtat |
109 |
Q |
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| T |
13587130 |
gggaatatggaacgttcgctctttgtttgattttttccttgggattggattttacagccgacgttgtaactaacacaattacgataaaaggtt---gtat |
13587226 |
T |
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| Q |
110 |
aacgaaattattgaccgaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtgggcacacagagaaatcaataatat |
209 |
Q |
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| T |
13587227 |
aacgaaattattgaccgaggactagaaccaggtaatgtaacatacactgctctagttcctggcttgttaaacagtgggcacacggagaaatcaataatat |
13587326 |
T |
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| Q |
210 |
tgtataatgaaatatcttccaatggaatgaaaccagcatttc |
251 |
Q |
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| T |
13587327 |
tgtataatgaaatatcttccaatgaaatgataccagcatttc |
13587368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 267142 - 267274
Alignment:
| Q |
113 |
gaaattattgaccgaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtgggcacacagagaaatcaataata-ttg |
211 |
Q |
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| T |
267142 |
gaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatatttg |
267241 |
T |
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| Q |
212 |
tataatgaaatatcttccaatggaatgaaacca |
244 |
Q |
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| T |
267242 |
tacaatgaaatgtcttccaagggaatgaaacca |
267274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 6783362 - 6783236
Alignment:
| Q |
113 |
gaaattattgaccgaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtgggcacacagagaaatcaataatattgt |
212 |
Q |
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| T |
6783362 |
gaaattattgaccaaggactaaaaccagatagagtaacatacactgctctaatttggggcttgttaaacggaaggcaaaaggagatagcaattatatact |
6783263 |
T |
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| Q |
213 |
ataatgaaatatcttccaatggaatga |
239 |
Q |
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| T |
6783262 |
atgatgaaatgtcttccaagggaatga |
6783236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 6783756 - 6783659
Alignment:
| Q |
11 |
gggaatatggaacgt--tcgttgtttgtttgattttttcttttggattggatttacacccgacgttgtaactaacacaatttcgataaaaggttattg |
106 |
Q |
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| T |
6783756 |
gggaatatggaacgtgctcgctctttgtttgattttttcatcgggagaggatttacgctcgtcgttgtaacttatacaattatgataaaaggttattg |
6783659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 51283741 - 51283868
Alignment:
| Q |
117 |
ttattgaccgaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtgggcacacagagaaatcaataatattgtataa |
216 |
Q |
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| T |
51283741 |
ttattaacagaggactagaaccagataatgtaacatacactgctttattttcgggcttgttaaacagtgggcacccagagatagaagttacattgtataa |
51283840 |
T |
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| Q |
217 |
tgaaatatcttccaatggaatgaaacca |
244 |
Q |
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| T |
51283841 |
tgaaatgtcttccaagggaatgacacca |
51283868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 41627994 - 41628112
Alignment:
| Q |
126 |
gaggactagaaccggataatgtaacatacactgctctagttcctggcttgttaaacagtgggcacacagagaaatcaataatattgtataatgaaatatc |
225 |
Q |
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||||||||||||| ||||||||||||||||||||| || || | |||||||||||||||||| || |||||| | || | | ||||||||||||||| || |
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| T |
41627994 |
gaggactagaaccagataatgtaacatacactgctttattttcgggcttgttaaacagtgggaactcagagatagcagttacattgtataatgaaatgtc |
41628093 |
T |
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| Q |
226 |
ttccaatggaatgaaacca |
244 |
Q |
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| T |
41628094 |
ttccaagggaatgacacca |
41628112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 41627611 - 41627687
Alignment:
| Q |
32 |
tttgtttgattttttcttttggattggatttacacccgacgttgtaactaacacaatttcgataaaaggttattgta |
108 |
Q |
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| T |
41627611 |
tttgtttgattttttccttgggagaggatttacgccagacgttgtgacttacacaatcatgataaaaagttattgta |
41627687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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