View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6525_low_1 (Length: 600)
Name: NF6525_low_1
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6525_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 573
Target Start/End: Complemental strand, 37306998 - 37306432
Alignment:
| Q |
11 |
cacagaacagtagtggcctcgggatgttgttgcagattaagttcctttaaacctttagtagcaatgaaaaccccctttgttgctgctactacattatttc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
37306998 |
cacataacagtagtggcctcgggatgttgttgcagattaagttcctttaaacctttagtagcaatgaaaaccccttttgttgctgctactacatcatttc |
37306899 |
T |
|
| Q |
111 |
ggagaaagagtagtagtagta---ttgtgatttgcaatgattccaacaaacagagtagcagtgttgaggagaaggaggaggttaaaagagattggacaac |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37306898 |
ggagaaagagtagtagtagtagtattgtgatttgcaatgattccaacaaacagaatagcagtgttgaggagaaggaggaggttaaaagagattggacaac |
37306799 |
T |
|
| Q |
208 |
ctcaattttactctttctcttatgggctgcacttatctactatgtttcttttctttccccaaaccagactccggttaca-----tatactatcttctttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||||| |||| |
|
|
| T |
37306798 |
ctcaattttactctttctcttatgggctgcacttatctactatgtttcttttctctccccaaaccagactccggtaatatatactatactatcttgtttt |
37306699 |
T |
|
| Q |
303 |
ttcatctttcacttcattatgcttgcttgcttatgtttattgnnnnnnngttcagtccagggacatgtatttcttgaaaaagctattgaatttgaaagga |
402 |
Q |
| |
|
||| ||||||| | || || |||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37306698 |
ttcttctttcaatgcacta----tgcttgcttatgtttatttatttattttgtagtcgagggacatgtatttcttgaaaaagctattgaatttgaaaggc |
37306603 |
T |
|
| Q |
403 |
gatgatggttttagaatgaatcaagtgcttgtttctgaatggtatataatgggtttctggtctttggtatatagcatgctgttacttcccactggaagaa |
502 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37306602 |
gatgatggttttagaatgaatgaagtgcttgtttctgaatggtatataatgggtttctggcctttggtatatagcatgctgttacttcccactggaagaa |
37306503 |
T |
|
| Q |
503 |
ggtaggtatttcccattttcatatgcatttttctctccaatacagcttttaactgacatggttatgtatgt |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37306502 |
ggtaggtatttcccattttcatatgcatttttctctccaatacagcttttaactcacatggttatgtatgt |
37306432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University