View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6525_low_11 (Length: 209)
Name: NF6525_low_11
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6525_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 45944897 - 45944733
Alignment:
| Q |
29 |
gaaaatgataaaggacttgtgtcagcaagggaattaacaaagttatgtatgttgatctgttctggatttgtatacggtgaacctcctctttcaaggaata |
128 |
Q |
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| T |
45944897 |
gaaaatgatgaaggacttatattaaaaagggcattaacaaagttatgtatgttgatctgttctggatttgtatatggtgaacctcctctttcaaggacta |
45944798 |
T |
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| Q |
129 |
aaacttttccaccttgtgaaagtgttgctgctagtggacaaccacatgttcctccaccaattact |
193 |
Q |
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| T |
45944797 |
aaacttttccaccttgtgaaagtgttgctgctagtggacaaccacatgttcctccaccaattact |
45944733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 45938145 - 45937991
Alignment:
| Q |
17 |
atgaattgttgggaaaatgataaaggacttgtgtcagcaagggaattaacaaagttatgtatgttgatctgttctggatttgtatacggtgaacctcctc |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45938145 |
atgaattgttgggaaaatgatgaaggacttgtgtcagcaagggaattaacaaagttatgtatgttgatctgttctggatttgtatatggtgaacctcctc |
45938046 |
T |
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| Q |
117 |
tttcaaggaataaaacttttccaccttgtgaaagtgttgctgctagtggacaaccacatgttcctcc |
183 |
Q |
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| T |
45938045 |
tttcaaggactaaaa------------gtgaaagtgttgcggcaagtggacaaccacatgttcctcc |
45937991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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