View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6525_low_5 (Length: 300)

Name: NF6525_low_5
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6525_low_5
NF6525_low_5
[»] chr7 (3 HSPs)
chr7 (1-282)||(10164292-10164575)
chr7 (2-197)||(10181553-10181753)
chr7 (2-197)||(10186593-10186793)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10164292 - 10164575
Alignment:
Q  1 gtcaacgcaaaaaactttctcataaggaggatacttcaggaatgatagaagtggaaaatgcagccatagataaccttgtttcagtctctagaatgaatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10164292 gtcaacgcaaaaaactttctcataaggaggatacttcaggaatgatagaagtggaaaatgcagccatagataaccttgtttcagtctctagaatgaatac 10164391  T
Q  101 t--ggactcaactccttcctctattagctctggttgccgtaacaccaaaggcatgtcatttgtccctcgagcttttcagtatggaaagggatcaaactcg 198  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10164392 tttggactcaactccttcctctattagctctggttgccgtaacaccaaaggcatgtcatttgtccctcgagcttttcagtatggaaagggatcaaactag 10164491  T
Q  199 ggtttttccgttacaaaaagataacatgcttcattcaaatcaatttgcattcttgtttgctgaatgatcattttcggatgttat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10164492 ggtttttccgttacaaaaagataacatgcttcattcaaatcaatttgcattcttgtttgctgaatgatcattttcggatgttat 10164575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 10181553 - 10181753
Alignment:
Q  2 tcaacgcaaaaaactttctcataaggaggatacttcaggaatgatagaagtggaaaatgcagccatagataaccttgtttcag---tctctagaatgaat 98  Q
    |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||| |||| |||||||   | |||||| | |||    
T  10181553 tcaacgcaaaaagccttctcaaaaggaggatacttcaggaatgatggaagtggaaaatgcagctatggatgacctcgtttcagcagtatctagattaaat 10181652  T
Q  99 actg--gactcaactccttcctctattagctctggttgccgtaacaccaaaggcatgtcatttgtccctcgagcttttcagtatggaaagggatcaaact 196  Q
    |||   ||| |  ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||  ||| |||||||| ||||    
T  10181653 acttcagacaccgctccttcctctatcagctttggtcgccgtaacaccaaaggcatgtcatttgtccctcgagctgttcagcgtgggaagggatctaact 10181752  T
Q  197 c 197  Q
    |    
T  10181753 c 10181753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 10186593 - 10186793
Alignment:
Q  2 tcaacgcaaaaaactttctcataaggaggatacttcaggaatgatagaagtggaaaatgcagccatagataaccttgtttcag---tctctagaatgaat 98  Q
    |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||| |||| |||||||   | |||||| | |||    
T  10186593 tcaacgcaaaaagccttctcaaaaggaggatacttcaggaatgatggaagtggaaaatgcagctatggatgacctcgtttcagcagtatctagattaaat 10186692  T
Q  99 actg--gactcaactccttcctctattagctctggttgccgtaacaccaaaggcatgtcatttgtccctcgagcttttcagtatggaaagggatcaaact 196  Q
    |||   ||| |  ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||  ||| |||||||| ||||    
T  10186693 acttcagacaccgctccttcctctatcagctttggtcgccgtaacaccaaaggcatgtcatttgtccctcgagctgttcagcgtgggaagggatctaact 10186792  T
Q  197 c 197  Q
    |    
T  10186793 c 10186793  T

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