View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6525_low_6 (Length: 284)
Name: NF6525_low_6
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6525_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 12144774 - 12145048
Alignment:
| Q |
1 |
taatgcctcattaataagtgtagcatctctttcagctggatccattatccaatgggaaatggctctctaatttcaatggtataaatttttggcaattaga |
100 |
Q |
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| T |
12144774 |
taatgcctcgttaataagtgtagcatctctttcagctggatccattatccaatgggaaatggctctctaatttcaatggtataaatttttggcaattaga |
12144873 |
T |
|
| Q |
101 |
atgatattcactcaaaacatacagaataatggtaacttataaaacattagtgttatgaattgtaacatatattt-acctcaaagtttcctgaaagttcag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12144874 |
atgatattcactcaaaacatacagaataatggtaacttataaaacattagtgttatgaattgtaacatatatttaacctcaaagtttcctgaaagttcag |
12144973 |
T |
|
| Q |
200 |
ttttgagctgttctataagatcttgatgataaatttcttgataagccagcctcacaagttttctttgagcttcat |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12144974 |
ttttgagctgttctataagatcttgatgataaatttcttgataagccagcctcacaagttttctttgagcttcat |
12145048 |
T |
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