View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6525_low_7 (Length: 278)
Name: NF6525_low_7
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6525_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 82 - 271
Target Start/End: Complemental strand, 31150626 - 31150437
Alignment:
| Q |
82 |
tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt |
181 |
Q |
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| T |
31150626 |
tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt |
31150527 |
T |
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| Q |
182 |
tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc |
271 |
Q |
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| T |
31150526 |
tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc |
31150437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 269
Target Start/End: Complemental strand, 31161868 - 31161733
Alignment:
| Q |
134 |
agattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatt |
233 |
Q |
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| T |
31161868 |
agattgaaaagatcgtcgaagaaattatgaatatactgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaatt |
31161769 |
T |
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| Q |
234 |
agaaaaacatttacttttggactcgcttgatgatgt |
269 |
Q |
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| T |
31161768 |
agaaaaacatttacttttggattcggttgatgatgt |
31161733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 31034207 - 31034102
Alignment:
| Q |
135 |
gattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatta |
234 |
Q |
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| T |
31034207 |
gattgaaaagattgttgaagagataataaatagattgggttaccggttttcaagtcttccaaaagatttagttgggattgattctcttatagaagaatta |
31034108 |
T |
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| Q |
235 |
gaaaaa |
240 |
Q |
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|||||| |
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| T |
31034107 |
gaaaaa |
31034102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 31159501 - 31159451
Alignment:
| Q |
108 |
taaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagat |
158 |
Q |
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| T |
31159501 |
taaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagat |
31159451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 31476882 - 31476951
Alignment:
| Q |
200 |
atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgt |
269 |
Q |
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| T |
31476882 |
atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgt |
31476951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 31528639 - 31528549
Alignment:
| Q |
130 |
gcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctc |
220 |
Q |
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| T |
31528639 |
gcagagattaaaaagattgttgaagagatagtaaatatattgaattgcaaattttcaagccttccaaatgatttagttgggacgcattctc |
31528549 |
T |
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