View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6525_low_9 (Length: 263)

Name: NF6525_low_9
Description: NF6525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6525_low_9
NF6525_low_9
[»] chr6 (2 HSPs)
chr6 (35-244)||(5948270-5948495)
chr6 (148-244)||(395414-395510)
[»] chr4 (2 HSPs)
chr4 (41-115)||(20320225-20320296)
chr4 (83-115)||(20321255-20321287)
[»] chr8 (1 HSPs)
chr8 (70-115)||(10161392-10161437)
[»] chr7 (1 HSPs)
chr7 (70-115)||(11019881-11019926)
[»] chr1 (3 HSPs)
chr1 (70-115)||(15550446-15550491)
chr1 (70-115)||(27054299-27054344)
chr1 (70-115)||(46602821-46602866)
[»] chr5 (2 HSPs)
chr5 (70-115)||(16438503-16438548)
chr5 (70-115)||(40796053-40796098)
[»] chr2 (1 HSPs)
chr2 (35-111)||(30777194-30777262)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 244
Target Start/End: Complemental strand, 5948495 - 5948270
Alignment:
Q  35 aatgtaaaagtggatcatttatgtcattaattctctaat--------tctcatatggggtcaaaagtggaattgttttgggaaacagggatagnnnnnnn 126  Q
    |||||||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||||||||||| |||| ||           
T  5948495 aatgtaaaagtggatcatttatgtcattaattctctaataatctaattcttatatggggtcaaaagtggaattgttttgggaaactgggacagaaaaaaa 5948396  T
Q  127 nnnnnnn--------tcgcgctctcagaggacttatcatcaacactaacacactcactgacttcagcattggtgaaactttgtttcgcttccgaatagac 218  Q
                   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5948395 aaaaaaaaaaaaaaatcgcgctctcacaggacttatcatcaacactaacacactcactgacttcagcattggtgaaactttgtttcgcttccgaatagac 5948296  T
Q  219 agtggctgaataataactgttctgag 244  Q
    ||||||||||||||||||||||||||    
T  5948295 agtggctgaataataactgttctgag 5948270  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 395510 - 395414
Alignment:
Q  148 gacttatcatcaacactaacacactcactgacttcagcattggtgaaactttgtttcgcttccgaatagacagtggctgaataataactgttctgag 244  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  395510 gacttatcatcaacactgacacactcactgacttcagtatcggtgaaactttgtttcgcttccgaatagacagtggctgaatagtaactgttctgag 395414  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 20320296 - 20320225
Alignment:
Q  41 aaagtggatcatttatgtcattaattctctaattctcatatggggtcaaaagtggaattgttttgggaaacaggg 115  Q
    ||||||| ||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||| ||||    
T  20320296 aaagtgggtcatttatgtcattaattctct---tctcatatggggtcaaaagtggagttgttttgggaaataggg 20320225  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 20321255 - 20321287
Alignment:
Q  83 gggtcaaaagtggaattgttttgggaaacaggg 115  Q
    |||||||||||||| ||||||||||||||||||    
T  20321255 gggtcaaaagtggagttgttttgggaaacaggg 20321287  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 10161437 - 10161392
Alignment:
Q  70 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  10161437 taattctcatatggggtcaaaagtggaattgatttgggaaacaggg 10161392  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 11019926 - 11019881
Alignment:
Q  70 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11019926 taattctcatatggggtcaaaagtggaattgatttgggaaacaggg 11019881  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 15550491 - 15550446
Alignment:
Q  70 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  15550491 taattctcatatggggtcaaaaatggaattgttttgggaaacaggg 15550446  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 27054344 - 27054299
Alignment:
Q  70 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  27054344 taattctcatatggggtcaaaagtggaattgttttgggaatcaggg 27054299  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 46602821 - 46602866
Alignment:
Q  70 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 115  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||    
T  46602821 taattctcatatggggtctaaagtggaattgatttgagaaacaggg 46602866  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 16438503 - 16438548
Alignment:
Q  70 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 115  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||    
T  16438503 taattctcatatggggtcaaaaatggaattgatttaggaaacaggg 16438548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 40796098 - 40796053
Alignment:
Q  70 taattctcatatggggtcaaaagtggaattgttttgggaaacaggg 115  Q
    ||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  40796098 taattttcatatgaggtcaaaagtggaattaatttgggaaacaggg 40796053  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 30777262 - 30777194
Alignment:
Q  35 aatgtaaaagtggatcatttatgtcattaattctctaattctcatatggggtcaaaagtggaattgttttgggaaac 111  Q
    ||||| |||||||||||||||||||||||||        ||||||| | ||||||||||||||||||| ||||||||    
T  30777262 aatgtgaaagtggatcatttatgtcattaat--------tctcataggaggtcaaaagtggaattgttctgggaaac 30777194  T

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