View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6526_high_1 (Length: 539)
Name: NF6526_high_1
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 26 - 526
Target Start/End: Original strand, 45969985 - 45970470
Alignment:
| Q |
26 |
atcaacctttcccatcttcattcgaagttctgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaac |
125 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45969985 |
atcaacctttcccatcttcattcgaagttccgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaac |
45970084 |
T |
|
| Q |
126 |
atataatgttagctaataattttttgttaattttaatcagaaaataataattcattccttcctaacttcatnnnnnnntgatgcaaatctccacgaaaat |
225 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
45970085 |
atataacgttagctaataattttttgttaattttaatcagaaaataataatt----------------cataaaaaaataatgcaaatctccacgaaaat |
45970168 |
T |
|
| Q |
226 |
gttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagagaattagaacatattgctcttt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970169 |
gttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagagaattagaacatattgctcttt |
45970268 |
T |
|
| Q |
326 |
ttccgtgatacactatttagtaaaaaactcgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtgaacctaaatagcatgtcgcgt |
425 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
45970269 |
ttccgtgaaacactatttagtaaaaaactcgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtgaacctaaatagcatgccgcgt |
45970368 |
T |
|
| Q |
426 |
aacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttccttaataa-gttcacggtattaacatcctgaccaatggtacctatg |
524 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45970369 |
aacataattttaatgtagcactattgataagagtttggttacagttatttcttccttaataaggttcacggtattaacatcctgaccaatggtacctatg |
45970468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 526
Target Start/End: Original strand, 45974497 - 45975006
Alignment:
| Q |
20 |
gttggtatcaacctttcccatcttcattcgaagttctgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || |||||| | |||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45974497 |
gttggtatcaacctttcccatcttcattcgaagttctaatagg-ttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaag |
45974595 |
T |
|
| Q |
120 |
tttaacatataatgttagctaataattttttgttaattttaatcagaaaataataattc-attccttcctaacttcatnnnnnnn-tgatgcaaatctcc |
217 |
Q |
| |
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|| |||||||||| |||| ||||||||| ||| |||||||||||||||||||| | ||| ||||||||||||||| || | |||| |||||| |
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| T |
45974596 |
ttcaacatataatattaggtaataatttgttgataattttaatcagaaaataaaatttctattccttcctaacttaataaaaaaaataatgccgatctcc |
45974695 |
T |
|
| Q |
218 |
acgaaaatgttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagagaattagaacatat |
317 |
Q |
| |
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| |||| |||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| ||| || || ||| | ||||||||| |||||||| |
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|
| T |
45974696 |
ataaaaaagttggcatcatttggttcatttctccgagtgttgtcaaacaactgctatagcagcgtta--gtcttatagcat-aagagaatttgaacatat |
45974792 |
T |
|
| Q |
318 |
tgctctttttccgtgatacactatttagtaaaaaact----cgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtgaacctaaat |
413 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| | |||||| |||| ||||||||| | ||||||||| || |||| ||||||||||||| |
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|
| T |
45974793 |
tgctctttttccgtgatacgctattttgtaaaaaactttgtcaaataagattcatagtagcgcccctgtagcaggaaaaaggttcaatgtgaacctaaat |
45974892 |
T |
|
| Q |
414 |
agcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttccttaataa-gttcacggtattaacatcctgacca |
512 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||| | || ||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
45974893 |
agcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctcccttaataaggttcacggtattaacatcctgacct |
45974992 |
T |
|
| Q |
513 |
atggtacctatgct |
526 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
45974993 |
atggcacctatgct |
45975006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 45857337 - 45857200
Alignment:
| Q |
32 |
ctttcccatcttcattcgaagttctgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaacatataa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
45857337 |
ctttcccatcttcattcgaagttctgaggcagttatcatgatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagttcaacatataa |
45857238 |
T |
|
| Q |
132 |
tgttagctaataattttttgttaattttaatcagaaaa |
169 |
Q |
| |
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| |||||||||||||| || |||||| |||||||||| |
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|
| T |
45857237 |
tattagctaataatttgttaataatttcaatcagaaaa |
45857200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 45869890 - 45869735
Alignment:
| Q |
32 |
ctttcccatcttcattcgaagttctgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaacatataa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
45869890 |
ctttcccatcttcattcgaagttctgaggcggtagtcatgatctcta-aggaacacaatcataattgtaaaaatctactgacttaaagttcaacatataa |
45869792 |
T |
|
| Q |
132 |
tgttagctaataattttttgttaattttaatcagaaaataataattcattccttcct |
188 |
Q |
| |
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| |||||||||||||| || |||||| |||||||||| | ||||||||| ||||| |
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|
| T |
45869791 |
tattagctaataatttgttaataatttcaatcagaaaaaacaaattcattctttcct |
45869735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 45980946 - 45981103
Alignment:
| Q |
32 |
ctttcccatcttcattcgaagttctgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaacatataa |
131 |
Q |
| |
|
|||||| ||||| | | |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
45980946 |
ctttcctatcttgagttgaagttctgaggcggttgtcataatctctgcaggaacacaaccataaatgtaaaaatctactgacttaaagttcaacatataa |
45981045 |
T |
|
| Q |
132 |
tgttagctaataattttttgttaattttaatcagaaaataataattcattccttccta |
189 |
Q |
| |
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| |||||||||| ||| || |||||| |||||||||| | ||||||||| |||||| |
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|
| T |
45981046 |
tattagctaatagtttgttaataatttcaatcagaaaaaacaaattcattctttccta |
45981103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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