View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6526_high_11 (Length: 251)
Name: NF6526_high_11
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40076410 - 40076649
Alignment:
| Q |
1 |
attcccttaattgacaaccatgcaaatttacatttatcgaaactacacaaaattagtttcactagacgacattttttcacaataagactagtaatcaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40076410 |
attcccttaattgacaaccatgcaaatttacatttatcgaaactacacaaaattagtttcactagacgacattttttcacaataagactagtaatcaaga |
40076509 |
T |
|
| Q |
101 |
agcattagctagcacatcttcatacgccacccatcaaaaaatcacccttaaaatagcattcatattcccaagagttcacaaacattcatacaattcaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40076510 |
agcattagctagcacatcttcatacgccacccataaaaaaataacccttaaaatagcattcatattcccaagagttcacaaacattcatacaattcaccc |
40076609 |
T |
|
| Q |
201 |
atggcaaccaaatttggttccaaaaacaaatcctcttcat |
240 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40076610 |
atggcacccaaatttggttccaaaaacaaatcctcttcat |
40076649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University