View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6526_high_12 (Length: 246)
Name: NF6526_high_12
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_high_12 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0242 (2 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 6911979 - 6911754
Alignment:
| Q |
19 |
ctagcatgtttactaatacgtatcaacattcagatgtgaagatccatgatgaagatgttgttgaagttgatgaaaaatggttcgtttatggagctgagca |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6911979 |
ctagcatgtttactaatatgtatcaacattcagatgtgaagatccatgatgaagatgttgttgaagttgatgaaaaatggtttgtttatggagctgagca |
6911880 |
T |
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| Q |
119 |
gaaggatgaggtcactaagtacatttcttctaggagagagattggttaccaaaactgacttcagtttagttgtttgacagatattatcaattacatacta |
218 |
Q |
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| T |
6911879 |
gaaggatgaggtcactaagtacatttcctctagga--gagattggttaccaaaactgacttcagtttagttgtttgacagatattatcaattacatacta |
6911782 |
T |
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| Q |
219 |
gtaatctgccagggataatttaaggttt |
246 |
Q |
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| T |
6911781 |
gtaatctgccagggataatttaaggttt |
6911754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 15560 - 15336
Alignment:
| Q |
19 |
ctagcatgtttactaatacgtatcaacattcagatgtgaagatccatgatgaagatgttgttgaagttgatgaaaaatggttcgtttatggagctgagca |
118 |
Q |
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||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
15560 |
ctagcatgtttactaatacatatcaacatacagatttgaagatccatgatgaagatgctgttgaagttgatgaaaaatggtttgtttatggagctgtgca |
15461 |
T |
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| Q |
119 |
gaaggatgaggtcactaagtacatttcttctaggagagagattggttaccaaaactgacttcagtttagttgtttgacagatattatcaattacatacta |
218 |
Q |
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| T |
15460 |
gaaggatgaggtcaataagtacaattcctctagga--gagattggttaccaaagctaacttttgtttagttgtttgagagatattaccaattacatacta |
15363 |
T |
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| Q |
219 |
gtaatctgccagggataatttaaggttt |
246 |
Q |
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| T |
15362 |
gtaatctg-aagggataatttaaggttt |
15336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 24395 - 24171
Alignment:
| Q |
19 |
ctagcatgtttactaatacgtatcaacattcagatgtgaagatccatgatgaagatgttgttgaagttgatgaaaaatggttcgtttatggagctgagca |
118 |
Q |
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||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
24395 |
ctagcatgtttactaatacatatcaacatacagatttgaagatccatgatgaagatgctgttgaagttgatgaaaaatggtttgtttatggagctgtgca |
24296 |
T |
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| Q |
119 |
gaaggatgaggtcactaagtacatttcttctaggagagagattggttaccaaaactgacttcagtttagttgtttgacagatattatcaattacatacta |
218 |
Q |
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| T |
24295 |
gaaggatgaggtcaataagtacaattcctctagga--gagattggttaccaaagctaacttttgtttagttgtttgagagatattaccaattacatacta |
24198 |
T |
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| Q |
219 |
gtaatctgccagggataatttaaggttt |
246 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
24197 |
gtaatctg-aagggataatttaaggttt |
24171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 158015 - 158174
Alignment:
| Q |
20 |
tagcatgtttactaatacgtatcaacattcagatgtgaagatccatgatgaagatgttgttgaagttgatgaaaaatggttcgtttatggagctgagcag |
119 |
Q |
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|||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
158015 |
tagcatgtttactaatacatatcaacatacagatttgaagatccatgatgaagatggtgttgaagttgatgaaaaatggtttgtttatggagctgaacag |
158114 |
T |
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| Q |
120 |
aaggatgaggtcactaagtacatttcttctaggagagagattggttaccaaaactgacttca |
181 |
Q |
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||||| ||||| | |||||||||||| ||||| |||| ||||||||||||| ||||||||| |
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| T |
158115 |
aaggacgaggttaataagtacatttcctctag--gagacattggttaccaaagctgacttca |
158174 |
T |
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