View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6526_high_15 (Length: 234)

Name: NF6526_high_15
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6526_high_15
NF6526_high_15
[»] chr5 (5 HSPs)
chr5 (1-226)||(34176-34401)
chr5 (43-219)||(24535566-24535741)
chr5 (95-187)||(12715173-12715265)
chr5 (95-187)||(12776404-12776496)
chr5 (41-82)||(29985226-29985267)
[»] chr1 (1 HSPs)
chr1 (1-224)||(39648589-39648812)
[»] scaffold0042 (1 HSPs)
scaffold0042 (166-226)||(88963-89023)
[»] chr8 (1 HSPs)
chr8 (1-73)||(13419792-13419864)
[»] chr3 (1 HSPs)
chr3 (43-83)||(5340708-5340748)
[»] chr4 (1 HSPs)
chr4 (43-82)||(19316163-19316202)
[»] scaffold0041 (1 HSPs)
scaffold0041 (178-222)||(47752-47796)
[»] chr7 (1 HSPs)
chr7 (178-222)||(40902222-40902266)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34401 - 34176
Alignment:
Q  1 gaagcgcaaccattcattccaacgccgtgtgaaaatcaccagcctctcctacatcaacatcacaaaggggagagaagcaatccatcttccaaagaacaaa 100  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34401 gaagcgcaaccatccattccaacaccgtgtgaaaatcaccagcctctcatacatcaacatcacaaaggggagagaagcaatccatcttccaaagaacaaa 34302  T
Q  101 ctcatttgtatcgttgcgaagacatattccactacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgtcggt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34301 ctcatttgtatcgttgcgaagacatattccaatacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgccggt 34202  T
Q  201 tttgtccactccaccacttctctgct 226  Q
    ||||||||||||||||||||||||||    
T  34201 tttgtccactccaccacttctctgct 34176  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 24535566 - 24535741
Alignment:
Q  43 cctctcctacatcaacatcacaaaggggagagaagcaatccatcttccaaagaacaaactcatttgtatcgttgcgaagacatattccactacctacctt 142  Q
    ||||||| ||||||||||||||||||||||| || || || ||||||   ||||||||| ||  |  |||||| ||||||||||||| | |||||||| |    
T  24535566 cctctcccacatcaacatcacaaaggggagaaaaacagtctatcttcgcgagaacaaacacaccta-atcgtttcgaagacatattctaatacctaccat 24535664  T
Q  143 attaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgtcggttttgtccactccaccactt 219  Q
    |||    || |   |||||| ||||||||||||||||||||| |||||||||| || |||| |||||||||||||||    
T  24535665 attcgaagaagataagaatgaggcatcaatgttacatttgtatctacctcgtgccgattttatccactccaccactt 24535741  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 12715173 - 12715265
Alignment:
Q  95 aacaaactcatttgtatcgttgcgaagacatattccactacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacct 187  Q
    ||||||||||  |||||| |||||||||||||||||| |||| ||| | || || |||| ||| |||| ||||||||| ||||||||||||||    
T  12715173 aacaaactcacatgtatcattgcgaagacatattccaatacccaccatgtttagggatgaggaaaatgaggcatcaatattacatttgtacct 12715265  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 12776404 - 12776496
Alignment:
Q  95 aacaaactcatttgtatcgttgcgaagacatattccactacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacct 187  Q
    ||||||||||  |||||| |||||||||||||||||| |||| ||| | || || |||| ||| |||| ||||||||| ||||||||||||||    
T  12776404 aacaaactcacatgtatcattgcgaagacatattccaatacccaccatgtttagggatgaggaaaatgaggcatcaatattacatttgtacct 12776496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 29985267 - 29985226
Alignment:
Q  41 agcctctcctacatcaacatcacaaaggggagagaagcaatc 82  Q
    ||||||||||| |||||| | |||||||||||||||||||||    
T  29985267 agcctctcctatatcaacttgacaaaggggagagaagcaatc 29985226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39648589 - 39648812
Alignment:
Q  1 gaagcgcaaccattcattccaacgccgtgtgaaaatcaccagcctctcctacatcaacatcacaaaggggagagaagcaatccatcttccaaagaacaaa 100  Q
    ||||||||||||| |||| |||||  |||||||    | |||||||||| ||||||||||||||||||||||| ||  | | | ||||    || |||||    
T  39648589 gaagcgcaaccatccattgcaacgatgtgtgaaggctaacagcctctcccacatcaacatcacaaaggggagaaaaatagttcgtctttgcgagcacaaa 39648688  T
Q  101 ctcatttgtatcgttgcgaagacatattccactacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgtcggt 200  Q
    | ||  || |||||| ||||||||||||||| |||||||| ||||    || |  ||||||| ||||||||||||| ||||||||||| |||||| ||||    
T  39648689 cacacctgaatcgtttcgaagacatattccaatacctaccatatttgaagaagatgagaatgaggcatcaatgttatatttgtacctatctcgtgccggt 39648788  T
Q  201 tttgtccactccaccacttctctg 224  Q
    ||||| ||||| ||||||||||||    
T  39648789 tttgtgcactcaaccacttctctg 39648812  T

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Target: scaffold0042 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 89023 - 88963
Alignment:
Q  166 catcaatgttacatttgtacctacctcgtgtcggttttgtccactccaccacttctctgct 226  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  89023 catcaatgttacatttgtacctacctcgtgttggttttgtccaccccaccacttatctgct 88963  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13419864 - 13419792
Alignment:
Q  1 gaagcgcaaccattcattccaacgccgtgtgaaaatcaccagcctctcctacatcaacatcacaaaggggaga 73  Q
    ||||||||||||| |||| |||||| ||||||||  || || ||||||| ||||||||||||||||| |||||    
T  13419864 gaagcgcaaccatccattgcaacgctgtgtgaaagccaacaacctctcccacatcaacatcacaaagaggaga 13419792  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 5340708 - 5340748
Alignment:
Q  43 cctctcctacatcaacatcacaaaggggagagaagcaatcc 83  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  5340708 cctctcccacatcaacatcacaaaggggagagaaacaatcc 5340748  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 19316163 - 19316202
Alignment:
Q  43 cctctcctacatcaacatcacaaaggggagagaagcaatc 82  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  19316163 cctctcctacatcaacatcacaaagaggagagaaacaatc 19316202  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 47796 - 47752
Alignment:
Q  178 atttgtacctacctcgtgtcggttttgtccactccaccacttctc 222  Q
    |||| ||||||||||||| ||||||||||||||||| | ||||||    
T  47796 atttatacctacctcgtgccggttttgtccactccagcgcttctc 47752  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 40902222 - 40902266
Alignment:
Q  178 atttgtacctacctcgtgtcggttttgtccactccaccacttctc 222  Q
    |||| ||||||||||||| ||||||||||||||||| | ||||||    
T  40902222 atttatacctacctcgtgccggttttgtccactccagcgcttctc 40902266  T

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