View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6526_high_5 (Length: 412)
Name: NF6526_high_5
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 79 - 395
Target Start/End: Complemental strand, 32429105 - 32428789
Alignment:
| Q |
79 |
aataatacattcaaaagaaaatcacttcaaatagtgcnnnnnnnntaaagagtattgatttttgtttgaaatttttatcgtaacttgatacctgaacaga |
178 |
Q |
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| T |
32429105 |
aataatacattcaaaagaaaatcacttcaaatagtgcaaaaaaaataaagagtattcatttttgtttgaattttttatcgtaacttgatacctgaacaga |
32429006 |
T |
|
| Q |
179 |
atcggcactaacgatttcaccattgatgattttagcaagttccattgcgagacggctcttaccggaaccggtgggtccagaaataactataaccttctct |
278 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32429005 |
atcggcactaacgatttcaccattgatgcttttagcaagttccattgcgagacggctcttaccggaaccggtgggtccagaaataactataaccttctct |
32428906 |
T |
|
| Q |
279 |
ttcttcttctccgttaatgatgcggcgacgaaaaaccggcgccggaaattgtaagagagcggagttgctcggaaaattggatgttccgggaggcggaggc |
378 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32428905 |
ttcttcttctccgttaatgatgcggtgacgaaaaaccggcgccggaaattgtaagagagcggagttgctcggaaaattggatgttccgggaggcggaggc |
32428806 |
T |
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| Q |
379 |
acgtgcggagactgtgt |
395 |
Q |
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||||||||||||||||| |
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| T |
32428805 |
acgtgcggagactgtgt |
32428789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32430178 - 32430097
Alignment:
| Q |
1 |
ttcgttcttaaccaatttctcacttaaaaataaataaaccccctaatcaaggtagttaaaatcaggtaggggaagtaaaata |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32430178 |
ttcgttcttaaccaatttctcacttaaaaataaataaacctcctaatcaaggtagttaaaatcaggtaggggaagtaaaata |
32430097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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