View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6526_high_6 (Length: 403)
Name: NF6526_high_6
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 41012238 - 41012617
Alignment:
| Q |
18 |
cacttacagcttgttgaatttcctgaatatcataaagcacaaaacggtgcataagcattccaacgaaaaaacttacctggagaaaactaatattgtgcta |
117 |
Q |
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| T |
41012238 |
cacttacagcttgttgaatttcctgaatatcataaagcacaaaacggtgcataagcattccaacgaaaaa-cttacctggagaaaactaatattgtgcta |
41012336 |
T |
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| Q |
118 |
aaagcaacatggtattaatttcaatcttttggaaatattgaaagcaacttgaatttagattcaggatgtgaaaaagcatggcgtggtca--ttacagtca |
215 |
Q |
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| T |
41012337 |
aaagcaacatggtattaatttcaatcttttggaaatattgaaagcaacttgaatttagattcaggatgtgaaaaagcatggcgtggtcacattacagtca |
41012436 |
T |
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| Q |
216 |
agagattggagtcattagacgaaaatcagacaattcacattctgagtttgtgttttaaatcttaagttattgaattgacatgagttgttagattttcatc |
315 |
Q |
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| T |
41012437 |
agagattggagtcattagacgaaaatcagacagttcacattctgagtttgtgttttaaatcttaagttaatgaattgacatgagttgttagattttcatc |
41012536 |
T |
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| Q |
316 |
aaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggaggggtgatttattcttctca |
396 |
Q |
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| T |
41012537 |
aaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggaggggtgatttattcttctca |
41012617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 12111214 - 12111302
Alignment:
| Q |
23 |
acagcttgttgaatttcctgaatatcataaagcacaaaacggtgcataagcattccaacgaaaaaacttacctggagaaaactaatattg |
112 |
Q |
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| T |
12111214 |
acagcttgttgaatttcctgaatatcataa-gcacaaaatggtgcatcagcattccaacgaaaaaacataactggagaaaactaatattg |
12111302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 208 - 378
Target Start/End: Original strand, 12111393 - 12111561
Alignment:
| Q |
208 |
tacagtcaagagattggagtcattagacgaaaatcagacaattcacattctgagtttgtgttttaaatcttaagttattgaattgacatgagttgttaga |
307 |
Q |
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| T |
12111393 |
tacagtcatcagactggagccattacatgaaaatcagacagttcacattctgactt-gtgatttaaatct-aatttactgaattgacacgagtcgttaga |
12111490 |
T |
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| Q |
308 |
ttttcatcaaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggagg |
378 |
Q |
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| T |
12111491 |
ttttcatcaatcgacaccaatcacatgactgcagttactgatgtactcactaaaaccaaggttttgggagg |
12111561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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