View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6526_high_7 (Length: 398)

Name: NF6526_high_7
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6526_high_7
NF6526_high_7
[»] chr8 (8 HSPs)
chr8 (18-382)||(7835181-7835551)
chr8 (18-311)||(7785907-7786206)
chr8 (18-311)||(7805828-7806127)
chr8 (310-384)||(7785705-7785779)
chr8 (310-384)||(7805626-7805700)
chr8 (57-209)||(18804111-18804267)
chr8 (57-209)||(20035298-20035454)
chr8 (296-343)||(20034986-20035033)
[»] scaffold0482 (2 HSPs)
scaffold0482 (18-311)||(12562-12861)
scaffold0482 (310-384)||(12989-13063)
[»] chr5 (2 HSPs)
chr5 (18-210)||(11018756-11018948)
chr5 (228-370)||(11019237-11019385)
[»] chr4 (3 HSPs)
chr4 (18-210)||(50067272-50067464)
chr4 (226-370)||(50067749-50067901)
chr4 (121-210)||(9354446-9354536)
[»] chr1 (2 HSPs)
chr1 (18-210)||(35757218-35757410)
chr1 (226-370)||(35757692-35757842)
[»] chr3 (8 HSPs)
chr3 (18-210)||(9307190-9307382)
chr3 (18-208)||(9295467-9295655)
chr3 (20-210)||(2545658-2545845)
chr3 (226-370)||(2546130-2546280)
chr3 (226-370)||(9306756-9306905)
chr3 (226-370)||(9295932-9296082)
chr3 (157-210)||(36434541-36434594)
chr3 (123-178)||(39771320-39771375)
[»] chr2 (2 HSPs)
chr2 (226-359)||(35882059-35882198)
chr2 (84-209)||(35882304-35882431)
[»] chr6 (1 HSPs)
chr6 (226-356)||(2848771-2848906)
[»] scaffold0206 (2 HSPs)
scaffold0206 (57-209)||(7228-7384)
scaffold0206 (296-343)||(6916-6963)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 7835551 - 7835181
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7835551 agcatgtatcatgattaatatgcatttcagtttatcatttgaataatgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 7835452  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttctatttttgt 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7835451 aactcattagttgaagcgataaaatcagagtcatttgacacaatgttaaaaatatttctctcttcacagattttcatgttgaagatttttctatttttgt 7835352  T
Q  218 caccaaattctctatttttgtctccaaattttgcaagtgcaacaagg------ttcaacaatgattaaacaaaatattcatgccaagaacatgttcaata 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||    
T  7835351 caccaaattctctatttttgtctccaaattttgcaagtgcaacaaggtagacattcaacaatgattaaacaaaatattcatgccaagaacatgttcaata 7835252  T
Q  312 ttagtttaggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaactagattgtcga 382  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  7835251 ttagtttaggaacaaaatatgtaaattcctttttagatcaattttgaatttatagttaactaaattgtcga 7835181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 7786206 - 7785907
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786206 agcatgtatcatgattaatatgcatttcagtttatcatttgaataatgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 7786107  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttctatttttgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786106 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttctatttttgt 7786007  T
Q  218 caccaaattctctatttttgtctccaaattttgcaagtgcaacaagg------ttcaacaatgattaaacaaaatattcatgccaagaacatgttcaata 311  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||      ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7786006 caccaaattctctatttttgtctccaaattttggaagtgcaacaaggtagacattcaacaataattaaacaaaatattcatgccaagaacatgttcaata 7785907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 7806127 - 7805828
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7806127 agcatgtatcatgattaatatgcatttcagtttatcatttgaataatgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 7806028  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttctatttttgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7806027 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttctatttttgt 7805928  T
Q  218 caccaaattctctatttttgtctccaaattttgcaagtgcaacaagg------ttcaacaatgattaaacaaaatattcatgccaagaacatgttcaata 311  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||      ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7805927 caccaaattctctatttttgtctccaaattttggaagtgcaacaaggtagacattcaacaataattaaacaaaatattcatgccaagaacatgttcaata 7805828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 7785779 - 7785705
Alignment:
Q  310 tattagtttaggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaactagattgtcgacc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7785779 tattagtttaggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaactagattgtcgacc 7785705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 7805700 - 7805626
Alignment:
Q  310 tattagtttaggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaactagattgtcgacc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805700 tattagtttaggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaactagattgtcgacc 7805626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 18804111 - 18804267
Alignment:
Q  57 tgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaataactcatt-agttgaagcgatgaaatcagagtcatttga 155  Q
    |||||| ||| ||||||||| | ||| |||| ||||||||| ||| |||   ||||||||||| ||||| ||| |||||||| |||||||||||||||||    
T  18804111 tgaataatgataattatgattatttggtcatgttcaacaatgtttgaaatagagagaaaataattcatttagtggaagcgataaaatcagagtcatttga 18804210  T
Q  156 cacaatgtta--aaaatatttctctcttc-aaagattttcatgttgaagatttttct 209  Q
    |||||||| |  ||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  18804211 cacaatgtcaacaaaatatttctctcttcaaaagattttcatgatgaggatatttct 18804267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 20035454 - 20035298
Alignment:
Q  57 tgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaataactcatt-agttgaagcgatgaaatcagagtcatttga 155  Q
    |||||| ||| ||||||||  | ||| |||| ||||||||| ||| |||   ||||||||| | ||||| ||| |||||||| |||||||||||||||||    
T  20035454 tgaatactgataattatgaatacttggtcatgttcaacaatgtttgaaatagagagaaaatgattcatttagtggaagcgataaaatcagagtcatttga 20035355  T
Q  156 cacaatgttaaaaatatttctctctt---caaagattttcatgttgaagatttttct 209  Q
    |||||||| ||||| || ||||||||    ||||||||||||| ||| ||| |||||    
T  20035354 cacaatgtcaaaaaaatatctctcttttcaaaagattttcatgatgatgatatttct 20035298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 20035033 - 20034986
Alignment:
Q  296 aagaacatgttcaatattagtttaggaacaaaatatgtaaatcccttt 343  Q
    ||||||||||| |||| ||||||||||| ||||| |||||||||||||    
T  20035033 aagaacatgtttaatactagtttaggaaaaaaatgtgtaaatcccttt 20034986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 12562 - 12861
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12562 agcatgtatcatgattaatatgcatttcagtttatcatttgaataatgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 12661  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttctatttttgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12662 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttctatttttgt 12761  T
Q  218 caccaaattctctatttttgtctccaaattttgcaagtgcaacaagg------ttcaacaatgattaaacaaaatattcatgccaagaacatgttcaata 311  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||      ||||||||| |||||||||||||||||||||||||||||||||||||    
T  12762 caccaaattctctatttttgtctccaaattttggaagtgcaacaaggtagacattcaacaataattaaacaaaatattcatgccaagaacatgttcaata 12861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 12989 - 13063
Alignment:
Q  310 tattagtttaggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaactagattgtcgacc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12989 tattagtttaggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaactagattgtcgacc 13063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 11018756 - 11018948
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11018756 agcatgtatcatgattaatatgcatttcagtttatcatctgaataatgacaattatgatcaattgatcattttcaacaattttttaaaacgagagaaaat 11018855  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttcta 210  Q
    || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  11018856 aattcattagtggaagcgatgaaatcagagtcatttgacacaatgtcaaaaatatttctctcttcaaagattttcatgttgaatatttttcta 11018948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 228 - 370
Target Start/End: Original strand, 11019237 - 11019385
Alignment:
Q  228 tctatttttgtctccaaattttgcaagtgcaacaaggt------tcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattagtttagg 321  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11019237 tctatttttgtctccaaattttgcaagtgcaacaaggtagacattcaacaatgattaaacaaaatattcatgccaagaatatgttcaatattagtttagg 11019336  T
Q  322 aacaaaatatgtaaatccctttttagatcaattttgaatttatagttaa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11019337 aacaaaatatgtaaatccctttttagatcaattttgaatttattgttaa 11019385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 50067272 - 50067464
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  50067272 agcatgtatcatgattagtatgcatttcagtttatcatttgaataatgacaattatgatcaattgatcattttcaacaattttttaaaatgagagaaaat 50067371  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttcta 210  Q
    || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50067372 aattcattagtggaagcgatgaaatcagagtcatttgacacaatgtcaaaaatatttctctcttcaaagattttcatgttgaagatttttcta 50067464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 50067749 - 50067901
Alignment:
Q  226 tctctatttttgtctccaaattttgcaagtgcaacaaggt------tcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattagtt-- 317  Q
    |||||||||||||||||||||||| |||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||| ||      
T  50067749 tctctatttttgtctccaaattttccaagtgcaacaaggtagacattcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattaattta 50067848  T
Q  318 taggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50067849 taggaacaaaatatgtaaatccctttttagatcaattttgaatttattgttaa 50067901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 9354536 - 9354446
Alignment:
Q  121 tcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttc-aaagattttcatgttgaagatttttcta 210  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||    
T  9354536 tcattagtggaagcgatgaaatcagagtcatttgacacaatgtcaaacatatttctctcttcaaaagattttcttgttgaagatttttcta 9354446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 35757218 - 35757410
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35757218 agcatgtatcatgattaatatgcatttcagtttatcatttgaataatgacaattatgatcaattgatcattttcaacaattttttaaaacgagagaaaat 35757317  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttcta 210  Q
    || |||||||| |||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  35757318 aattcattagtggaagcgatgaaatcagagtcatttgacacaatgccaaaaatatttttctcttcaaagattttcatgttgaagatttttcta 35757410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 35757692 - 35757842
Alignment:
Q  226 tctctatttttgtctccaaattttgcaagtgcaacaaggt------tcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattagttta 319  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35757692 tctctatttttgtctccaaattttgcaagtgcaacaaggtagacattcaacaatgattaaacaaaatattcatgtcaagaacatgttcaatattagttta 35757791  T
Q  320 ggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35757792 ggaacaaaatatgtaaatccctttttagatcaattttgaatttattgttaa 35757842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 9307382 - 9307190
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| ||||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  9307382 agcatgtatcatgattaatatgcatttcagtttatcgtttcaataatgacaactatgatcaattgatcattttcaacaattttttaaaacgagagaaaat 9307283  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttcta 210  Q
    || |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||    
T  9307282 aattcattagtggaagcgatgaaatcagagtcatttgacacaatgtcaaaattatttctctcttcaaagttttccatgttgaagatttttcta 9307190  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 9295467 - 9295655
Alignment:
Q  18 agcatgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9295467 agcatgtaacatgattaatatgcatttcagtttatcatttgaataatcacaattatgatcaattgatcattttcaacaattttttaaaacgagagaaaat 9295566  T
Q  118 aactcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttc 208  Q
    || |||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  9295567 aattcattagtggaagctatgaaatcagagtcatttgacgcaatgtcaaaaatatttctctc--caaagattttcatgttgaagatttttc 9295655  T

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Target: chr3; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 2545658 - 2545845
Alignment:
Q  20 catgtaccatgattaatatgcatttcagtttatcatttgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaataa 119  Q
    |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2545658 catgtatcatgattaatatgcatttcagtttatcatttaaataatgacaattatgatcaattgatcattttcaacaattttttaaaacgagagaaaataa 2545757  T
Q  120 ctcattagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttcta 210  Q
     ||||||   |||||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  2545758 ttcatta--cgaagcgatgaaatcagagtcatttgatac-atgtcaaaaatatttctctcttcgaagattttcatgttgaagatttttcta 2545845  T

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Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 2546130 - 2546280
Alignment:
Q  226 tctctatttttgtctccaaattttgcaagtgcaacaaggt------tcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattagttta 319  Q
    ||||||||||||||||||||||||||| ||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2546130 tctctatttttgtctccaaattttgcaggtgcaacaaggtagacattcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattagttta 2546229  T
Q  320 ggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2546230 ggaacaaaatatgtaaatccctttttagatcaattttgaatttattgttaa 2546280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 226 - 370
Target Start/End: Complemental strand, 9306905 - 9306756
Alignment:
Q  226 tctctatttttgtctccaaattttgcaagtgcaacaaggt------tcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattagttta 319  Q
    ||||||||||||||||||||||||| ||||||||||||||      ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9306905 tctctatttttgtctccaaattttg-aagtgcaacaaggtagacattcaacaatgattaaacaaaatattcatgccaagaacatgctcaatattagttta 9306807  T
Q  320 ggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaa 370  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  9306806 ggaacaaaatatgtaaatcccgttttagatcaattttgaatttattgttaa 9306756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 9295932 - 9296082
Alignment:
Q  226 tctctatttttgtctccaaattttgcaagtgcaacaaggt------tcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattagttta 319  Q
    ||||||||||||||||||||||||||||||||||||||||      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9295932 tctctatttttgtctccaaattttgcaagtgcaacaaggtaaacattcaacgatgattaaacaaaatattcatgccaagaacatgttcaatattagttta 9296031  T
Q  320 ggaacaaaatatgtaaatccctttttagatcaattttgaatttatagttaa 370  Q
    |||| |||| ||  ||||||||||||||||||||||||||||||| |||||    
T  9296032 ggaataaaacattcaaatccctttttagatcaattttgaatttattgttaa 9296082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 36434541 - 36434594
Alignment:
Q  157 acaatgttaaaaatatttctctcttcaaagattttcatgttgaagatttttcta 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36434541 acaatgtcaaaaatatttctctcttcaaagattttcatgttgaagatttttcta 36434594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 39771320 - 39771375
Alignment:
Q  123 attagttgaagcgatgaaatcagagtcatttgacacaatgttaaaaatatttctct 178  Q
    ||||||||||||| |||||||| |||||||||||| || || ||||||||||||||    
T  39771320 attagttgaagcgttgaaatcatagtcatttgacataaagtcaaaaatatttctct 39771375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 226 - 359
Target Start/End: Complemental strand, 35882198 - 35882059
Alignment:
Q  226 tctctatttttgtctccaaattttgcaagtgcaacaagg-----ttcaacaatgattaaacaaaatatt-catgccaagaacatgttcaatattagttta 319  Q
    |||||||||||||||| ||||||||||| ||||||| |      ||||||||||||| |||||||  || |||| |||||||||||| ||||||||||||    
T  35882198 tctctatttttgtctctaaattttgcaaatgcaacaggtagacattcaacaatgattcaacaaaaactttcatgacaagaacatgtttaatattagttta 35882099  T
Q  320 ggaacaaaatatgtaaatccctttttagatcaattttgaa 359  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  35882098 ggaacaaaatgtgtaaatccctttttagatcaattttgaa 35882059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 35882431 - 35882304
Alignment:
Q  84 tcattttcaacaattttttaaaaccagagaaaataactcattagttgaagcgatgaaatcagagtcatttgacacaatgt-taaaaatatttctctcttc 182  Q
    |||| ||||||||| ||| |||   ||||||||| | |||||||| |||||||| |||||||||| ||||||||||||||  ||||||||||||||||||    
T  35882431 tcatgttcaacaatgtttgaaatagagagaaaatgattcattagtggaagcgataaaatcagagttatttgacacaatgtaaaaaaatatttctctcttc 35882332  T
Q  183 -aaagattttcatgttgaagatttttct 209  Q
     ||||||||| ||| ||||||| |||||    
T  35882331 aaaagatttttatgatgaagatatttct 35882304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 2848906 - 2848771
Alignment:
Q  226 tctctatttttgtctccaaattttgcaagtgcaacaaggt------tcaacaatgattaaacaaaatattcatgccaagaacatgttcaatattagttta 319  Q
    ||||||||||||||| |||||||||||||||||| |||||      |||||||||||| |||||||  ||||||  ||||||||||| |||||||| | |    
T  2848906 tctctatttttgtctgcaaattttgcaagtgcaataaggtatacattcaacaatgattcaacaaaac-ttcatgataagaacatgtttaatattagctaa 2848808  T
Q  320 ggaacaaaatatgtaaatccctttttagatcaatttt 356  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  2848807 ggaacgaaatgtgtaaatccctttttagatcaatttt 2848771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 7384 - 7228
Alignment:
Q  57 tgaatagtgacaattatgatcaattgatcattttcaacaattttttaaaaccagagaaaataactcatt-agttgaagcgatgaaatcagagtcatttga 155  Q
    |||||| ||| ||||||||  | ||| |||| ||||||||| ||| |||   ||||||||| | ||||| ||| |||||||| |||||||||||||||||    
T  7384 tgaatactgataattatgaatacttggtcatgttcaacaatgtttgaaatagagagaaaatgattcatttagtggaagcgataaaatcagagtcatttga 7285  T
Q  156 cacaatgttaaaaatatttctctctt---caaagattttcatgttgaagatttttct 209  Q
    |||||||| ||||| || ||||||||    ||||||||||||| ||| ||| |||||    
T  7284 cacaatgtcaaaaaaatatctctcttttcaaaagattttcatgatgatgatatttct 7228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 6963 - 6916
Alignment:
Q  296 aagaacatgttcaatattagtttaggaacaaaatatgtaaatcccttt 343  Q
    ||||||||||| |||| ||||||||||| ||||| |||||||||||||    
T  6963 aagaacatgtttaatactagtttaggaaaaaaatgtgtaaatcccttt 6916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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