View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6526_low_10 (Length: 372)
Name: NF6526_low_10
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 119 - 361
Target Start/End: Original strand, 38053790 - 38054032
Alignment:
| Q |
119 |
agttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatcgagagattcctgcactcatggg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38053790 |
agttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatcgagagattcctgcactcatggg |
38053889 |
T |
|
| Q |
219 |
tgtttcgaaggccattttggaaaatgttatattcgttcatcaagatgaagcaaattggccacttcaagatccttccacgttaaagaagaagtttgatgac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38053890 |
tgtttcgaaggccattttggaaaatgttatattcgttcatcaagatgaagcaaattggccacttcaagatccttccacgttaaagaagaagtttgatgac |
38053989 |
T |
|
| Q |
319 |
atcttttccgcaactcggtaccttctactaatccctctttcat |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38053990 |
atcttttccgcaactcggtaccttctactaatccctctttcat |
38054032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 38053716 - 38053758
Alignment:
| Q |
45 |
aatttccttatatttatattatggtatgtactttactggctga |
87 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38053716 |
aatttcgttatatttatattatggtatgtactttactggctga |
38053758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 28720846 - 28720905
Alignment:
| Q |
121 |
ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctataga |
180 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||||| ||| |||| ||||| ||||||| |
|
|
| T |
28720846 |
ttctcaaattaatttgacctggttgctctgctctattggaatgtttaccttaactataga |
28720905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 30254085 - 30254010
Alignment:
| Q |
121 |
ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatc |
196 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||| ||| |||| ||||| ||||| | ||||| |||| |||| |
|
|
| T |
30254085 |
ttctcaaattaacttgacctggttgctctgctctattggaatgtttaccttaactatatacgtgctcacatagatc |
30254010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 11237677 - 11237735
Alignment:
| Q |
121 |
ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatag |
179 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||||||| |||| ||||| |||||| |
|
|
| T |
11237677 |
ttctcaaattaacttgacctggttgctctactctattagaatgtttaccttaactatag |
11237735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University