View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6526_low_11 (Length: 368)
Name: NF6526_low_11
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_low_11 |
 | |
|
| [»] scaffold1108 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 20531733 - 20532073
Alignment:
| Q |
17 |
cagaatttatatgcgctaggagcgaggaagattggtgtgccaacattagttccattgggttgcttgcctgcagccatcactctctttggccctgctcata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20531733 |
cagaatttatatgcgctaggagcgaggaagattggtgtgccaacattaattccattgggttgcttgcctgcagccatcactctctttggccctgctcata |
20531832 |
T |
|
| Q |
117 |
gcaaagaatgtgtagtccaaataaacaatgttgctatttactttaatcaaaagctgaactcaacatctgtgaacttgagaaaaaagcttcccggcctcag |
216 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20531833 |
gcaaagaatgtgtagtcaaaataaacgatgttgctatttactttaatcaaaagctgaactcaacatctgtgaacttgagaaaaaagcttcccggcctcag |
20531932 |
T |
|
| Q |
217 |
tttggctatacttgatgcctacaaacctttccataacctagtcactaaaccatctgaatatggtaccaaaataagtccattcttctctaattataagtca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
20531933 |
tttggctatacttgatgcctacaaacctttccataacctagtcactaaaccatctgaatatggtaccaaaataagtccattcttctttaattatatgtca |
20532032 |
T |
|
| Q |
317 |
tatttctaagtaggataatcaactctaattagctcattctt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20532033 |
tatttctaagtaggataatcaactctaattagctcattctt |
20532073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 20594088 - 20594125
Alignment:
| Q |
17 |
cagaatttatatgcgctaggagcgaggaagattggtgt |
54 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
20594088 |
cagaatttatatgcactaggagcaaggaagattggtgt |
20594125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 35790034 - 35789945
Alignment:
| Q |
17 |
cagaatttatatgcgctaggagcgaggaagattggtgtgccaacattagttccattgggttgcttgcctgcagccatcactctctttggc |
106 |
Q |
| |
|
|||||||| ||||| || || || ||||| |||||||| |||| ||| ||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
35790034 |
cagaatttgtatgcacttggggcaaggaaaattggtgtaacaaccttacctccattgggttgcctgccagcagccatcactctctttggc |
35789945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1108 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1108
Description:
Target: scaffold1108; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 823 - 860
Alignment:
| Q |
17 |
cagaatttatatgcgctaggagcgaggaagattggtgt |
54 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
823 |
cagaatttatatgcactaggagcaaggaagattggtgt |
860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University