View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6526_low_19 (Length: 223)
Name: NF6526_low_19
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 27436816 - 27436989
Alignment:
| Q |
32 |
taatactctaaacaatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtat |
131 |
Q |
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| T |
27436816 |
taatactctaaacaatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagctgcaataaacgcggtat |
27436915 |
T |
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| Q |
132 |
acatgcagacatacttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgctt |
205 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27436916 |
acatgcagacatacgtgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgctt |
27436989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 27945308 - 27945481
Alignment:
| Q |
32 |
taatactctaaacaatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtat |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27945308 |
taatactctaaacaatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagctgcaataaacgcggtat |
27945407 |
T |
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| Q |
132 |
acatgcagacatacttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgctt |
205 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27945408 |
acatgcagacatacgtgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgctt |
27945481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 27549392 - 27549229
Alignment:
| Q |
42 |
aacaatttgaattgtaattattattactattatttt-cttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtatacatgcaga |
140 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |
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| T |
27549392 |
aacaatttgaattataattattattactattattttacttataattatctaattcaaatgttcacaaatgcagttgccataaatgcggcatacatgcaga |
27549293 |
T |
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| Q |
141 |
catacttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgct |
204 |
Q |
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||||| ||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
27549292 |
catacgtgggaggtgtatcgtgcccatacacttgtacaaggaggctggatcatggagttttgct |
27549229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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