View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6526_low_2 (Length: 424)
Name: NF6526_low_2
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 40 - 408
Target Start/End: Complemental strand, 28580559 - 28580201
Alignment:
| Q |
40 |
atatatagtttatacatttcattgttaatttaaactatattgagtttttgatcagttgattagttgatgcctttattatagtataaatgtcgtgtacata |
139 |
Q |
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| T |
28580559 |
atatatagtttatacatttcattgttaatttaaactatattgagtttttgatcagttgat--------gcctttattatagtataaatgtcgtgtacata |
28580468 |
T |
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| Q |
140 |
ttacgagttgaattcacatagatgaaatgagtttggactcttgattttacaaccttgccgatcttaactattttgagacatggtgtttgtgttgtagatt |
239 |
Q |
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| T |
28580467 |
ttacgagttgaattcacatagatgaaatgagtttggactcttgattttacaacattgccgatcttaactattttgagacatggtgtttgtgttgtagatt |
28580368 |
T |
|
| Q |
240 |
gctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaggccgatgtttgttgcaccgtcaatgaatgatgttatgtgga |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
28580367 |
gctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaagccgatgtttgttgcaccgtcaatgaatgatgccatgtgga |
28580268 |
T |
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| Q |
340 |
gaaaaatccattcacagaacaacaattgatgaggattgaaaagcttggtgttactgttatccaacctgt |
408 |
Q |
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| T |
28580267 |
g--aaatcctttcacagaacaacaattgatgaggattgaaaagcttggtgttactgttatccaacctgt |
28580201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 202 - 408
Target Start/End: Complemental strand, 28585404 - 28585201
Alignment:
| Q |
202 |
cttaactattttgagacatggtgtttgtgttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaggcc |
301 |
Q |
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| T |
28585404 |
cttaactgttttgaggaatggtgtt-gtgttgtagatttctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagcc |
28585306 |
T |
|
| Q |
302 |
gatgtttgttgcaccgtcaatgaatgatgttatgtggagaaaaatccattcacagaacaacaattgatgaggattgaaaagcttggtgttactgttatcc |
401 |
Q |
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||||||||||||||| |||||| ||| | ||||||||| ||| || ||||||||||| | || ||||| |||||| |||||||||||||| |||||| |
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| T |
28585305 |
gatgtttgttgcaccatcaatggatggttgtatgtggag--aaaccctttcacagaacagaacttcatgagcattgaagagcttggtgttactcttatcc |
28585208 |
T |
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| Q |
402 |
aacctgt |
408 |
Q |
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|||||| |
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| T |
28585207 |
cacctgt |
28585201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 408
Target Start/End: Original strand, 28417828 - 28418033
Alignment:
| Q |
200 |
atcttaactattttgagacatggtgtttgtgttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagagg |
299 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||| ||||| |||||||||| ||||| | |||||| |||||||||||||||||| | |
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| T |
28417828 |
atcttaactatta-gagacatcttgtttgtgttgtagattgctggagggttgtgtgacaatctattgacaagcattgtgagagcatgggactacgagaag |
28417926 |
T |
|
| Q |
300 |
ccgatgtttgttgcaccgtcaatgaatgatgttatgtggagaaaaatccattcacagaacaacaattgatgaggattgaaaagcttggtgttactgttat |
399 |
Q |
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| T |
28417927 |
ccgatgttcgttgcaccatcaatggatggttgtatgtggag--aaaccctttcacagaacagaacttcatgagcattgaagagcttggtgttactcttat |
28418024 |
T |
|
| Q |
400 |
ccaacctgt |
408 |
Q |
| |
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|| |||||| |
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| T |
28418025 |
cccacctgt |
28418033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 202 - 408
Target Start/End: Original strand, 28404395 - 28404598
Alignment:
| Q |
202 |
cttaactattttgagacatggtgtttgtgttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaggcc |
301 |
Q |
| |
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||||||| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| | |||||| |||||||||||||||||| ||| |
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| T |
28404395 |
cttaactgttttgaggaatggtgtt-gtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagcc |
28404493 |
T |
|
| Q |
302 |
gatgtttgttgcaccgtcaatgaatgatgttatgtggagaaaaatccattcacagaacaacaattgatgaggattgaaaagcttggtgttactgttatcc |
401 |
Q |
| |
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|||||| |||||||| |||||| ||| | ||||||||| ||| || ||||||||||| | || ||||| |||||| |||||||||||||| | |||| |
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| T |
28404494 |
gatgttcgttgcaccatcaatggatggttgtatgtggag--aaaccctttcacagaacagaacttcatgagcattgaagagcttggtgttactctcatcc |
28404591 |
T |
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| Q |
402 |
aacctgt |
408 |
Q |
| |
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|||||| |
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| T |
28404592 |
cacctgt |
28404598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 343
Target Start/End: Original strand, 28420253 - 28420365
Alignment:
| Q |
231 |
ttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaggccgatgtttgttgcaccgtcaatgaatgatg |
330 |
Q |
| |
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|||||||||| ||| ||||| |||| |||||| | || | ||||||| || ||||| |||| ||| ||| |||||||| ||||| ||||||||||||| |
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| T |
28420253 |
ttgtagattggtggagggttgtgtgataatctgctaacaagtattgtgagatcatggaactataagaagccaatgtttgtagcaccatcaatgaatgatg |
28420352 |
T |
|
| Q |
331 |
ttatgtggagaaa |
343 |
Q |
| |
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||||||||||| |
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| T |
28420353 |
caatgtggagaaa |
28420365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 343
Target Start/End: Complemental strand, 28581937 - 28581825
Alignment:
| Q |
231 |
ttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaggccgatgtttgttgcaccgtcaatgaatgatg |
330 |
Q |
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|||||||||| ||| ||||| |||| |||||| | || | ||||||| || ||||| |||| ||| ||| |||||||| ||||| ||||||||||||| |
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| T |
28581937 |
ttgtagattggtggagggttgtgtgataatctgctaacaagtattgtgagatcatggaactataagaagccaatgtttgtagcaccatcaatgaatgatg |
28581838 |
T |
|
| Q |
331 |
ttatgtggagaaa |
343 |
Q |
| |
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||||||||||| |
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|
| T |
28581837 |
caatgtggagaaa |
28581825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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