View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6526_low_3 (Length: 416)
Name: NF6526_low_3
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 45568281 - 45567957
Alignment:
| Q |
16 |
agcatccagaggattgtcaggggattcattgaataagctactgcaccatatgatctagaaggacatgaagacagaggattgttagatacccttaatttag |
115 |
Q |
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| T |
45568281 |
agcatccagaggattgtcaggggattcattgaataagctactgcaccatatgatctagaaggacatgaagacagaggattgttagatacccttaatttag |
45568182 |
T |
|
| Q |
116 |
ttttaatttgttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaat |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45568181 |
ttttaattagttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaat |
45568082 |
T |
|
| Q |
216 |
ttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcag-nnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattg |
314 |
Q |
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| T |
45568081 |
ttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagtttttttttcctcgtgtcttaattggttaattaacaggtcttaaattg |
45567982 |
T |
|
| Q |
315 |
tcttaacggaccagttatctcatat |
339 |
Q |
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| T |
45567981 |
tcttaacggaccagttatctcatat |
45567957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 148 - 403
Target Start/End: Original strand, 35817131 - 35817385
Alignment:
| Q |
148 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaat |
247 |
Q |
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| T |
35817131 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggatgatagtgttaatttaatcgatgagaaattatttgaaaagcaaat |
35817230 |
T |
|
| Q |
248 |
ggaccgctgagaagatgcag--nnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaa |
345 |
Q |
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| T |
35817231 |
ggaccactgggaagatgcaggtttttttttcctcgtgtcttaaatggtt-attaacaggtcttaaattgtctcaatggaccagttatctc--atctgaaa |
35817327 |
T |
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| Q |
346 |
agggtagatgagaatttaaagaatattggtcattacagacactacgtttgaatcctga |
403 |
Q |
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|||||||||||||| ||| |||||||||||||||| ||||||||| ||||||| |||| |
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| T |
35817328 |
agggtagatgagaaattatagaatattggtcattatagacactacatttgaatactga |
35817385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 35816752 - 35816864
Alignment:
| Q |
16 |
agcatccagaggattgtcaggggattcattgaataagctactgcaccatatgatctagaaggacatgaagacagaggattgttagatacccttaatttag |
115 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35816752 |
agcatccagaggattgtcgggggattcattgaataagctactgcaccgtataatcttgaaggacatgaaagcagaggattgttagatacccttaatttag |
35816851 |
T |
|
| Q |
116 |
ttttaatttgttt |
128 |
Q |
| |
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|||||||| |||| |
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|
| T |
35816852 |
ttttaattagttt |
35816864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 160 - 399
Target Start/End: Complemental strand, 45093218 - 45092988
Alignment:
| Q |
160 |
gatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgaga |
259 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||| | |||||| ||||||||||||| |||||| ||||| |
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| T |
45093218 |
gatacttgccacaatttttcactatccctatttgagtcttggatgatag-gttaatctaatcattgagaaataatttgaaaagcaactggaccattgaga |
45093120 |
T |
|
| Q |
260 |
agatgcagnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaaagggtagatgagaa |
359 |
Q |
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| ||||| |||||||| |||| ||||||||||||||||||||| || ||| |||| |||||||||| ||||||||||||||||| |
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| T |
45093119 |
aaatgcaagtttttttcctcgtgtattaaatggttaattaacaggtcttaa--------aatggaagagttctctcatatctcaaaagggtagatgagaa |
45093028 |
T |
|
| Q |
360 |
tttaaagaatattggtcattacagacactacgtttgaatc |
399 |
Q |
| |
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|||||||||| ||| || || ||||||||| |||||||| |
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| T |
45093027 |
tttaaagaattttgatcgttgtagacactacatttgaatc |
45092988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 45177245 - 45177357
Alignment:
| Q |
16 |
agcatccagaggattgtcaggggattcattgaataagctactgcaccatatgatctagaaggacatgaagacagaggattgttagatacccttaatttag |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| | ||||||| |||| ||||| ||||||| |||||||||||||||| ||||||||||| |
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| T |
45177245 |
agcatccagaggattgtcaggggattcgttgaagaagctaccgaaccatattatcttgaagggcatgaaggcagaggattgttagatgcccttaatttac |
45177344 |
T |
|
| Q |
116 |
ttttaatttgttt |
128 |
Q |
| |
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|||||||| |||| |
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| T |
45177345 |
ttttaattagttt |
45177357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 45093598 - 45093489
Alignment:
| Q |
16 |
agcatccagaggattgtcaggggattcattgaataagctactgcaccatatgatctagaaggacatgaagacagaggattgttagatacccttaatttag |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| ||| |||||||||||||| |||||||| |||| || ||||||||||||||||||| |||||| |
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| T |
45093598 |
agcatccagaggattgtcatgggattcatt---taagttaccgcaccatatgatcttgaaggacacgaaggcaaaggattgttagatacccttcatttag |
45093502 |
T |
|
| Q |
116 |
ttttaatttgttt |
128 |
Q |
| |
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|||||||| |||| |
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|
| T |
45093501 |
ttttaattagttt |
45093489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 45102804 - 45102728
Alignment:
| Q |
18 |
catccagaggattgtcaggggattcattgaataagctactgcaccatatgatctagaaggacatgaagacagaggat |
94 |
Q |
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|||||| ||||||||| |||||||||||||||||||||| |||||||||| | | ||||| ||||||| |||||||| |
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| T |
45102804 |
catccacaggattgtcgggggattcattgaataagctaccgcaccatatggttttgaagggcatgaaggcagaggat |
45102728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 45567958 - 45567911
Alignment:
| Q |
359 |
atttaaagaatattggtcattacagacactacgtttgaatcctgatga |
406 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45567958 |
atttaaagaatattggtcattacagacacaacgtttgaatcctgatga |
45567911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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