View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6526_low_4 (Length: 414)
Name: NF6526_low_4
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6526_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 52446098 - 52445741
Alignment:
| Q |
1 |
attgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacatta |
100 |
Q |
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| T |
52446098 |
attgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataataaaataatgaacatcaacacaactatacatta |
52445999 |
T |
|
| Q |
101 |
tgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcatacgtgtcacggt |
200 |
Q |
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| T |
52445998 |
tgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacatgaag--------agtaaatcaaacatcaacatcatcatacgtgtcagggt |
52445907 |
T |
|
| Q |
201 |
tcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaaga |
300 |
Q |
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| T |
52445906 |
tcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttttagacaaatgtgttagtactcaatagtttgtaaga |
52445807 |
T |
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| Q |
301 |
agaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
366 |
Q |
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| T |
52445806 |
agaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
52445741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 52447031 - 52446722
Alignment:
| Q |
7 |
attgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattg |
106 |
Q |
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| T |
52447031 |
attgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataatagaacaatgaacatcaacataaccatacattacgattg |
52446933 |
T |
|
| Q |
107 |
tgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcat----------acgtgtca |
196 |
Q |
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| T |
52446932 |
tggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaaatcaaacatcaatatcatcgtacataagtgaacgtatca |
52446841 |
T |
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| Q |
197 |
cggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgt |
296 |
Q |
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||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||||||| || |||| ||||| |
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| T |
52446840 |
aggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacctaaaacttgtagacagatatgttagtgcttaataatttgt |
52446741 |
T |
|
| Q |
297 |
aagaagaaattaaacatat |
315 |
Q |
| |
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| ||| ||||||||||||| |
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| T |
52446740 |
atgaataaattaaacatat |
52446722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 361
Target Start/End: Complemental strand, 52447786 - 52447657
Alignment:
| Q |
232 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
331 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
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| Q |
332 |
gataaggtgtgtataaatatgtctttaatt |
361 |
Q |
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| T |
52447686 |
gataagatgtgtattaatatgaatttaatt |
52447657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 52445451 - 52445417
Alignment:
| Q |
364 |
atctccgatggaggtccttaccattgctggtggat |
398 |
Q |
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| T |
52445451 |
atctccgacggaggtccttaccattgctggtggat |
52445417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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