View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6526_low_9 (Length: 379)

Name: NF6526_low_9
Description: NF6526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6526_low_9
NF6526_low_9
[»] chr4 (7 HSPs)
chr4 (23-280)||(49159176-49159429)
chr4 (312-379)||(49159057-49159124)
chr4 (311-373)||(14043948-14044010)
chr4 (319-375)||(17115920-17115976)
chr4 (320-372)||(18862402-18862454)
chr4 (220-275)||(42451963-42452018)
chr4 (317-370)||(43148556-43148609)
[»] chr7 (4 HSPs)
chr7 (312-375)||(1295576-1295639)
chr7 (303-376)||(16984321-16984393)
chr7 (317-373)||(2847151-2847207)
chr7 (218-280)||(2847264-2847326)
[»] chr2 (6 HSPs)
chr2 (312-373)||(34608775-34608836)
chr2 (318-373)||(25770409-25770464)
chr2 (317-373)||(25780903-25780959)
chr2 (220-280)||(26227813-26227873)
chr2 (226-280)||(41101315-41101370)
chr2 (317-373)||(26170176-26170232)
[»] chr8 (5 HSPs)
chr8 (317-376)||(15892033-15892092)
chr8 (317-373)||(32158709-32158765)
chr8 (220-275)||(33609438-33609493)
chr8 (218-275)||(32158622-32158679)
chr8 (218-251)||(40520067-40520100)
[»] chr1 (4 HSPs)
chr1 (312-373)||(5270142-5270203)
chr1 (320-374)||(2093635-2093689)
chr1 (332-373)||(47542948-47542989)
chr1 (220-264)||(10884523-10884567)
[»] chr6 (2 HSPs)
chr6 (318-374)||(24359195-24359251)
chr6 (316-364)||(3442804-3442851)
[»] chr5 (2 HSPs)
chr5 (320-374)||(22858539-22858593)
chr5 (348-376)||(2598536-2598564)
[»] chr3 (1 HSPs)
chr3 (317-373)||(44893611-44893667)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 23 - 280
Target Start/End: Complemental strand, 49159429 - 49159176
Alignment:
Q  23 taaccattatataaatctcataaatccacatggataaa-acattattttttaaatggcaatgcctatttgaatatcatattcatccgataataaaatgag 121  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49159429 taaccattatataaatctcataaatccacatggataaggacattattttttaaatggcaatgcctatttgaatatcatattcatccaataataaaatgag 49159330  T
Q  122 tgttgaaagaaaatgtctgaacggacagaataatagacttttggtatttatgattttgggccaaacgggcttggatgataagatgaagatttgagcaaga 221  Q
     ||| ||||||| ||||     ||||  || ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49159329 cgttaaaagaaagtgtc-----ggactaaacaatgggtctttggtatttatgattttgggccaaacgggcttggatgataagatgaagatttgagcaaga 49159235  T
Q  222 attctgctctttatccaacaaaaaatgctcattcttaactgaaataactataattcccc 280  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||    
T  49159234 attctgctctttatccaacaaaaaatgctaattcccaactgaaatgactataattcccc 49159176  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 312 - 379
Target Start/End: Complemental strand, 49159124 - 49159057
Alignment:
Q  312 agggatatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattctttgaa 379  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49159124 aggggtatttttggaattttagtttggaatgagcaaaatgtgttgggtaaagagcagaattctttgaa 49159057  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 14044010 - 14043948
Alignment:
Q  311 tagggatatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    |||||| ||||| |||||||||||| |||||||||| |||||||| |||||||||||||||||    
T  14044010 tagggacattttaggaatttcagttgggaatgagcaaaatgtgtttggtaaagagcagaattc 14043948  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 17115920 - 17115976
Alignment:
Q  319 tttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattctt 375  Q
    ||||| |||||||||||  ||||||||| |||||||| |||||||||||||||||||    
T  17115920 ttttttgaatttcagttgagaatgagcaaaatgtgttaggtaaagagcagaattctt 17115976  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 18862402 - 18862454
Alignment:
Q  320 ttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaatt 372  Q
    ||||| |||||||||| |||||||||| |||||||| ||| ||||||||||||    
T  18862402 ttttgaaatttcagttgggaatgagcaaaatgtgttaggttaagagcagaatt 18862454  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 42452018 - 42451963
Alignment:
Q  220 gaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataat 275  Q
    |||||||| |||||||||||  ||||||| ||||||| ||||||||| ||||||||    
T  42452018 gaattctgttctttatccaatcaaaaatgttcattctcaactgaaatgactataat 42451963  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 43148609 - 43148556
Alignment:
Q  317 tatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaa 370  Q
    |||||||  ||||| |||| |||||||||| ||||| |||||||||||||||||    
T  43148609 tatttttaaaattttagttgggaatgagcaaaatgtattgggtaaagagcagaa 43148556  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 1295576 - 1295639
Alignment:
Q  312 agggatatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattctt 375  Q
    |||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  1295576 aggggtatttttgaaatttcagttaggaatgagcaaaatgtgttgggtaaagagcagaattctt 1295639  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 16984393 - 16984321
Alignment:
Q  303 aactcagatagggatatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattcttt 376  Q
    |||||| | ||||||| ||||||||||| |||| |||||||||| ||||||||||||  |||||||||||||||    
T  16984393 aactcacacagggataattttggaattttagttgggaatgagcaaaatgtgttgggt-tagagcagaattcttt 16984321  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 2847207 - 2847151
Alignment:
Q  317 tatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    ||||||| ||||||||||| |||||||||| ||  |||| |||||||||||||||||    
T  2847207 tatttttagaatttcagttgggaatgagcaaaacatgttaggtaaagagcagaattc 2847151  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 2847326 - 2847264
Alignment:
Q  218 aagaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataattcccc 280  Q
    ||||||||||||||||| || |||||||||| | ||||  ||||||||| |||||||| ||||    
T  2847326 aagaattctgctctttaccctacaaaaaatgtttattcccaactgaaatgactataatgcccc 2847264  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 34608775 - 34608836
Alignment:
Q  312 agggatatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| |||||    
T  34608775 agggatatttttggaatttcagttgggaataagcaaaatgtgttgggtaaagagcaaaattc 34608836  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 25770409 - 25770464
Alignment:
Q  318 atttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    |||||| |||||||||||   |||||||| ||||||||||||||||||||||||||    
T  25770409 atttttagaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcagaattc 25770464  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 25780903 - 25780959
Alignment:
Q  317 tatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    |||||||| |||||||||| | |||||||| ||||||||||||||| |||| |||||    
T  25780903 tatttttgaaatttcagttggaaatgagcaaaatgtgttgggtaaatagcacaattc 25780959  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 26227873 - 26227813
Alignment:
Q  220 gaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataattcccc 280  Q
    |||| |||||||||| ||||||||||||||||||||  ||||||||  |||||||| ||||    
T  26227873 gaatcctgctctttacccaacaaaaaatgctcattccgaactgaaaatactataatacccc 26227813  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 41101370 - 41101315
Alignment:
Q  226 tgctctttatccaacaaaaaatgctcatt-cttaactgaaataactataattcccc 280  Q
    ||||||||||||||||||||||||||||| |  ||||||||| |||||||| ||||    
T  41101370 tgctctttatccaacaaaaaatgctcattccccaactgaaatgactataatgcccc 41101315  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 26170232 - 26170176
Alignment:
Q  317 tatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    ||||||||||||||||||| ||   ||||| | ||||||| ||||||||||||||||    
T  26170232 tatttttggaatttcagttgggcgcgagcaaattgtgttgagtaaagagcagaattc 26170176  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 15892092 - 15892033
Alignment:
Q  317 tatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattcttt 376  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||    
T  15892092 tatttttggaatttcagttgggaatgagcataatgtgttgggtaaagaacataattcttt 15892033  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 32158709 - 32158765
Alignment:
Q  317 tatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    ||||||||||||||| ||| | |||||||| ||||||||||||||||||| ||||||    
T  32158709 tatttttggaatttcggttggcaatgagcaaaatgtgttgggtaaagagcggaattc 32158765  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 33609493 - 33609438
Alignment:
Q  220 gaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataat 275  Q
    ||||| || |||||| ||||| ||||||||||||||| ||||||||| ||||||||    
T  33609493 gaattttggtctttacccaaccaaaaatgctcattctcaactgaaatgactataat 33609438  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 32158622 - 32158679
Alignment:
Q  218 aagaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataat 275  Q
    ||||||| ||||||||| ||||| ||||||||||||||  |||| |||| ||||||||    
T  32158622 aagaattatgctctttacccaaccaaaaatgctcattcccaactaaaatgactataat 32158679  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 40520067 - 40520100
Alignment:
Q  218 aagaattctgctctttatccaacaaaaaatgctc 251  Q
    |||||||||||||||||||||||||||| |||||    
T  40520067 aagaattctgctctttatccaacaaaaattgctc 40520100  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 5270142 - 5270203
Alignment:
Q  312 agggatatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    |||| ||||||||||||||||||| | ||||| || |||||||||||||||||||| |||||    
T  5270142 aggggtatttttggaatttcagttggaaatgaacaaaatgtgttgggtaaagagcaaaattc 5270203  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 2093635 - 2093689
Alignment:
Q  320 ttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattct 374  Q
    |||||||| ||||||| |||||||  | | |||||||||||||||||||||||||    
T  2093635 ttttggaacttcagttgggaatgattaaattgtgttgggtaaagagcagaattct 2093689  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 47542989 - 47542948
Alignment:
Q  332 agtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    |||| |||||||||| ||||||||||| ||||||||||||||    
T  47542989 agttgggaatgagcaaaatgtgttggggaaagagcagaattc 47542948  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 10884567 - 10884523
Alignment:
Q  220 gaattctgctctttatccaacaaaaaatgctcattcttaactgaa 264  Q
    ||||||||||||||| |||| ||||| |||||||||| |||||||    
T  10884567 gaattctgctctttacccaaaaaaaattgctcattctcaactgaa 10884523  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 24359195 - 24359251
Alignment:
Q  318 atttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattct 374  Q
    ||||||||||||||||||   |||||| | |||||||||||||||||||||||||||    
T  24359195 atttttggaatttcagttgaaaatgagaaaaatgtgttgggtaaagagcagaattct 24359251  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 3442804 - 3442851
Alignment:
Q  316 atatttttggaatttcagtttggaatgagcagaatgtgttgggtaaaga 364  Q
    |||||||| ||||||||||| |||||||||  |||||||||||||||||    
T  3442804 atatttttagaatttcagtt-ggaatgagcgaaatgtgttgggtaaaga 3442851  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 22858539 - 22858593
Alignment:
Q  320 ttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattct 374  Q
    |||||| ||||||||| ||||||| || || ||||||||||||||||| ||||||    
T  22858539 ttttgggatttcagttgggaatgaacaaaacgtgttgggtaaagagcataattct 22858593  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 376
Target Start/End: Complemental strand, 2598564 - 2598536
Alignment:
Q  348 aatgtgttgggtaaagagcagaattcttt 376  Q
    |||||||||||||||||||||||||||||    
T  2598564 aatgtgttgggtaaagagcagaattcttt 2598536  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 44893611 - 44893667
Alignment:
Q  317 tatttttggaatttcagtttggaatgagcagaatgtgttgggtaaagagcagaattc 373  Q
    |||||||| |||||||||| |||||||||| ||| | ||  ||||||||||||||||    
T  44893611 tatttttgaaatttcagttgggaatgagcaaaatatattatgtaaagagcagaattc 44893667  T

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