View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6527_high_12 (Length: 280)
Name: NF6527_high_12
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6527_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 3451335 - 3451058
Alignment:
| Q |
3 |
atatgatcatggttatggaacaggatatgcaggacaattgagaagtgtgaagttttgattgaaaagggtcaatgacattttctatcatgtacaaaa---g |
99 |
Q |
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| T |
3451335 |
atatgatcatggttatggaacaggatatgcaggacaattgagaagtgtgaagttttgattgaaaaggatcaatgacattttctatcatgtacaaaattag |
3451236 |
T |
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| Q |
100 |
caaacttcgaacttctttttcaaccgaaaagggta--------gttgcatgtgatgacaatgtgaattttgaagagcaaaacaacttagtatttgcaaac |
191 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3451235 |
caaacttcgaacttctttttcaaccgaaaagggtacatgtgtagttgcatgtgatgacaatgtgaattttgaagagcaaaataacttagtatttgcaaac |
3451136 |
T |
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| Q |
192 |
cagcacttag--ataacatcatagtagttatgttaggtcatatacttacataaagtaaattttagactatttatttat |
267 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451135 |
cagcacttagatataacatcatagtagttatgttaggtcatatacttacataaagtaaattttagactatttatttat |
3451058 |
T |
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