View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6527_high_17 (Length: 251)

Name: NF6527_high_17
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6527_high_17
NF6527_high_17
[»] chr7 (6 HSPs)
chr7 (136-233)||(4700682-4700777)
chr7 (136-213)||(4833755-4833831)
chr7 (1-57)||(32047129-32047185)
chr7 (136-208)||(4714371-4714442)
chr7 (1-57)||(9877241-9877297)
chr7 (1-57)||(23102532-23102588)
[»] chr3 (8 HSPs)
chr3 (16-57)||(11250545-11250586)
chr3 (1-57)||(11436544-11436600)
chr3 (1-57)||(32144624-32144680)
chr3 (1-57)||(32256528-32256584)
chr3 (1-57)||(39719975-39720031)
chr3 (1-57)||(41936381-41936437)
chr3 (1-57)||(53432711-53432767)
chr3 (1-57)||(53906419-53906475)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-57)||(10800-10856)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-57)||(56363-56419)
[»] chr8 (2 HSPs)
chr8 (1-57)||(5328541-5328597)
chr8 (1-57)||(23261341-23261397)
[»] chr6 (2 HSPs)
chr6 (1-57)||(8297667-8297723)
chr6 (1-57)||(24758779-24758835)
[»] chr5 (3 HSPs)
chr5 (1-57)||(9958617-9958673)
chr5 (1-57)||(13621920-13621976)
chr5 (1-57)||(42916429-42916485)
[»] chr4 (6 HSPs)
chr4 (1-57)||(2222579-2222635)
chr4 (1-57)||(3036029-3036085)
chr4 (1-57)||(3297204-3297260)
chr4 (1-57)||(11375863-11375919)
chr4 (1-57)||(21935517-21935573)
chr4 (1-57)||(42395267-42395323)
[»] chr2 (2 HSPs)
chr2 (1-57)||(16385016-16385072)
chr2 (1-57)||(33228907-33228963)
[»] chr1 (4 HSPs)
chr1 (1-57)||(6893211-6893267)
chr1 (1-57)||(7191072-7191128)
chr1 (1-74)||(14349684-14349759)
chr1 (1-57)||(21265696-21265752)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 4700777 - 4700682
Alignment:
Q  136 atctataatagacctaaaattgctaaattttaagcttttttattcgtgtcccactttggtgcaataattgttaaggactgctccgtcggtcccaaact 233  Q
    |||||||||||||||||||||||||||||  ||| |||||| ||| |||||||||| |||||||||||||||||||||| ||||||  ||||||||||    
T  4700777 atctataatagacctaaaattgctaaattagaagttttttt-ttcttgtcccactt-ggtgcaataattgttaaggactactccgttcgtcccaaact 4700682  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 4833831 - 4833755
Alignment:
Q  136 atctataatagacctaaaattgctaaattttaagcttttttattcgtgtcccactttggtgcaataattgttaaggac 213  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||||| ||||| |||| |||||||| |||| ||||    
T  4833831 atctataatagacctaaaattgctgaattataagctttttcattcgtgccccac-ttggcgcaataatcgttagggac 4833755  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32047129 - 32047185
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| |||||| || |||||||||||||||||    
T  32047129 tatgcaggggccggggttcgaaccccggacacctcacttctccacaattaaattgtg 32047185  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 4714442 - 4714371
Alignment:
Q  136 atctataatagacctaaaattgctaaattttaagcttttttattcgtgtcccactttggtgcaataattgtta 208  Q
    |||| ||||||||||| ||||||| |||| ||||||||||  || ||| ||||| ||||||||||||| ||||    
T  4714442 atctttaatagacctacaattgctgaattataagctttttcttttgtgacccac-ttggtgcaataatcgtta 4714371  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9877297 - 9877241
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  9877297 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 9877241  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23102588 - 23102532
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  23102588 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 23102532  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 11250586 - 11250545
Alignment:
Q  16 gttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    |||||||||||||||||| || || |||||||||||||||||    
T  11250586 gttcgaactccggataccccacttctccacaattaaattgtg 11250545  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11436544 - 11436600
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||||||||||||| | ||| ||| || || |||||||||||||||||    
T  11436544 tatgcaggggccgtggttcgaaccctggacaccccacttctccacaattaaattgtg 11436600  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32144624 - 32144680
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||  ||| ||||||||| ||||| ||| ||||| |||||||||||||||||    
T  32144624 tatgcaggagccggggttcgaaccccggacaccccatttctccacaattaaattgtg 32144680  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32256584 - 32256528
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  32256584 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 32256528  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39719975 - 39720031
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  39719975 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 39720031  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41936437 - 41936381
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  41936437 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 41936381  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 53432767 - 53432711
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  53432767 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 53432711  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 53906419 - 53906475
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| |||| |||| ||||| || ||| ||||||||||||||||||||    
T  53906419 tatgcaggggccggggtttgaaccccggacacttcacttttccacaattaaattgtg 53906475  T

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Target: scaffold0088 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10856 - 10800
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  10856 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 10800  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 56363 - 56419
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| || || || |||||| |||||||||||||||||    
T  56363 tatgcaggggccggggttcgaaccccagacacttcatttctccacaattaaattgtg 56419  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5328597 - 5328541
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| |||||| || |||||||||||| ||||    
T  5328597 tatgcaggggccggggttcgaaccccggacacctcacttctccacaattaaaatgtg 5328541  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23261341 - 23261397
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||||||| ||||||||| ||||| ||  || || |||||||||||||||||    
T  23261341 tatgcagggaccggggttcgaaccccggacactccacttctccacaattaaattgtg 23261397  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8297667 - 8297723
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  8297667 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 8297723  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24758779 - 24758835
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    |||||||||  || ||||||||| |||||||| ||| || |||||||||||||||||    
T  24758779 tatgcaggggtcggggttcgaaccccggatacttcacttctccacaattaaattgtg 24758835  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9958617 - 9958673
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    |||||||||| || ||||||||| ||||| |||||| || ||| |||||||||||||    
T  9958617 tatgcagggatcgaggttcgaaccccggacacctcacttctccccaattaaattgtg 9958673  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13621976 - 13621920
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  13621976 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 13621920  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42916429 - 42916485
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  42916429 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 42916485  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2222579 - 2222635
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  2222579 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 2222635  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3036085 - 3036029
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  3036085 tatgcaggggccgaggttcgaaccccggacaccccacttctccacaattaaattgtg 3036029  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3297260 - 3297204
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| |||||||||| ||||  ||||| || |||||||||||||||||    
T  3297260 tatgcaggggccggggttcgaacttcggacgcctcacttctccacaattaaattgtg 3297204  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11375919 - 11375863
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| |||||| || |||||||||||| ||||    
T  11375919 tatgcaggggccggggttcgaaccccggacacctcacttctccacaattaaaatgtg 11375863  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21935517 - 21935573
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  21935517 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 21935573  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42395267 - 42395323
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    |||| |||| ||| ||||||||||||||| ||| || || |||||||||||||||||    
T  42395267 tatgtaggggccggggttcgaactccggacaccccacttctccacaattaaattgtg 42395323  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16385072 - 16385016
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||| ||||| ||||||||||||||| ||  || || |||||||||||||||||    
T  16385072 tatgcagagaccggggttcgaactccggacactccacttctccacaattaaattgtg 16385016  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33228963 - 33228907
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  33228963 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 33228907  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6893267 - 6893211
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||  || ||||||||||||||||||||    
T  6893267 tatgcaggggccgaggttcgaaccccggacactccacttttccacaattaaattgtg 6893211  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7191072 - 7191128
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| | | ||||||||| ||||| |||||| || |||||||||||||||||    
T  7191072 tatgcaggggctggggttcgaaccccggacacctcacttctccacaattaaattgtg 7191128  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14349684 - 14349759
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg--accactagactacttga 74  Q
    |||| ||||| || ||||||||| ||||| ||  ||||| |||||||||||||||||   ||||||||||||||||    
T  14349684 tatgtagggatcggggttcgaaccccggacactacatttctccacaattaaattgtgtagccactagactacttga 14349759  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21265696 - 21265752
Alignment:
Q  1 tatgcagggaccgtggttcgaactccggatacctcatttttccacaattaaattgtg 57  Q
    ||||||||| ||| ||||||||| ||||| ||| || || |||||||||||||||||    
T  21265696 tatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtg 21265752  T

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