View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6527_high_2 (Length: 452)

Name: NF6527_high_2
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6527_high_2
NF6527_high_2
[»] chr4 (19 HSPs)
chr4 (14-447)||(10982274-10982707)
chr4 (13-220)||(3343025-3343236)
chr4 (14-151)||(39289956-39290096)
chr4 (40-150)||(3343494-3343604)
chr4 (14-202)||(3343737-3343929)
chr4 (94-151)||(39289949-39290006)
chr4 (95-151)||(43107946-43108002)
chr4 (35-151)||(3343702-3343815)
chr4 (14-70)||(43107952-43108011)
chr4 (14-74)||(3343689-3343749)
chr4 (198-277)||(43108177-43108256)
chr4 (94-151)||(3343276-3343333)
chr4 (33-74)||(3343420-3343461)
chr4 (22-158)||(39290192-39290331)
chr4 (100-151)||(3343879-3343930)
chr4 (90-153)||(3343967-3344030)
chr4 (94-158)||(10982267-10982328)
chr4 (94-151)||(3343433-3343490)
chr4 (14-50)||(39290136-39290172)
[»] chr7 (12 HSPs)
chr7 (94-273)||(28950535-28950715)
chr7 (14-151)||(3203824-3203964)
chr7 (35-152)||(31860831-31860948)
chr7 (36-151)||(35153525-35153640)
chr7 (14-148)||(3203917-3204054)
chr7 (40-151)||(31860656-31860767)
chr7 (94-132)||(3204023-3204061)
chr7 (18-158)||(3203637-3203780)
chr7 (18-62)||(31860901-31860948)
chr7 (297-353)||(31861143-31861199)
chr7 (378-430)||(31861895-31861948)
chr7 (239-275)||(31861073-31861109)
[»] chr1 (3 HSPs)
chr1 (94-277)||(9846151-9846335)
chr1 (18-84)||(3547019-3547085)
chr1 (35-151)||(9845972-9846087)
[»] chr5 (8 HSPs)
chr5 (14-151)||(12513166-12513303)
chr5 (14-74)||(12513066-12513126)
chr5 (190-277)||(30840222-30840310)
chr5 (18-132)||(18960492-18960605)
chr5 (35-148)||(18960688-18960800)
chr5 (94-151)||(18960657-18960714)
chr5 (101-151)||(10928036-10928086)
chr5 (186-274)||(10927875-10927963)
[»] chr2 (12 HSPs)
chr2 (186-273)||(35711696-35711783)
chr2 (14-146)||(35687259-35687394)
chr2 (36-122)||(11879667-11879753)
chr2 (100-156)||(11879898-11879954)
chr2 (14-73)||(18483895-18483957)
chr2 (102-151)||(11879993-11880043)
chr2 (105-151)||(18483148-18483194)
chr2 (94-132)||(38179661-38179699)
chr2 (93-158)||(35687161-35687226)
chr2 (14-74)||(38179668-38179731)
chr2 (186-277)||(18483832-18483924)
chr2 (94-158)||(35711567-35711631)
[»] chr8 (2 HSPs)
chr8 (94-144)||(9321595-9321645)
chr8 (14-74)||(9321575-9321638)
[»] chr6 (1 HSPs)
chr6 (198-277)||(8037661-8037740)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Original strand, 10982274 - 10982707
Alignment:
Q  14 aaaccaagtgtcatgactcatgaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  10982274 aaaccaagtgtcatgactcatgaatacatgcaacaagccaaatgtcaaaaggaatacatgcggtaagccaagtatcaccaatgcagtaaaccaagtgtca 10982373  T
Q  114 tgactcatgaggaatacatataacaagccaagtgtcaaaatgaattttgcaacaatttaagtgttaccaatacaacaaaccaaatgtcaagaggaataca 213  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10982374 tgactcatgaggaatacatataataagccaagtgtcaaaatgaattttgcaacaatttaagtgttaccaattcaacaaaccaaatgtcaagaggaataca 10982473  T
Q  214 agcaacaaccagatgttacccaagtaataacccaaatatcacgaggaatgcatgcaacaacccattgtcatccattcagcctggaggattacatgcaaca 313  Q
     |||||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  10982474 tgcaacaaccaaatgttacctaagtaataacccaaatgtcacgaggaatgcacgcaacaatccattgtcatccgttcagtctggaggattacatgcaaca 10982573  T
Q  314 agccaaatgttattcatgctttaaaatatatttctctcttttgtcctcttgaatcccaaacaatttatttatgtgattgttaatattttaataatgaact 413  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10982574 agccaaatattattcatgctttaaaatatatttctttcttttgtccccttgaatcccaaacaatttatttatgtgattgttaatattttaataatgaact 10982673  T
Q  414 tttacagaaataatttattttacatattcttcga 447  Q
    ||||||||||||||||||||||||| || |||||    
T  10982674 tttacagaaataatttattttacatttttttcga 10982707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 3343236 - 3343025
Alignment:
Q  13 aaaaccaagtgtcatgactcatgaa---tacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagt 109  Q
    |||||||||||||||||||||||||   ||||| |||||| |||| ||| ||||  |||  ||||  |||| ||| | | ||| ||||| |||||||| |    
T  3343236 aaaaccaagtgtcatgactcatgaacaatacatacaacaaaccaagtgtgaaaagaaatcaatgcaataagccaagtgttacttatgcaataaaccaaat 3343137  T
Q  110 gtcatgactcatgaggaatacatataacaagccaagtgtcaaaatg-aattttgcaacaatttaagtgttaccaatacaacaaaccaaatgtcaagagga 208  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||| | |    | ||||||||||||||||||| || ||||||| ||| ||||||||  |    
T  3343136 gtcatgattcatgagaaatacatacaacaagccaagtgtcaaaaggtacgcatacaacaatttaagtgttacccatgcaacaaaacaattgtcaagaaaa 3343037  T
Q  209 atacaagcaaca 220  Q
    ||||| ||||||    
T  3343036 atacatgcaaca 3343025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 39289956 - 39290096
Alignment:
Q  14 aaaccaagtgtcatgactcatga---atacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtg 110  Q
    |||||||||||||||||||||||   | |||| ||||||||||| |||||| |  ||||||||| | ||| ||| | | ||| || || | |||||||||    
T  39289956 aaaccaagtgtcatgactcatgatgaacacatacaacaagccaagtgtcaagagaaatacatgcagcaagccaaatgttacttatacaatgaaccaagtg 39290055  T
Q  111 tcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    |||||||  |||||||||||||  |||||||||||||||||    
T  39290056 tcatgacatatgaggaatacatgcaacaagccaagtgtcaa 39290096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 3343604 - 3343494
Alignment:
Q  40 catgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgactcatgaggaatacatataacaa 139  Q
    ||||||| ||||||| |||||| | |||||||||| | ||| ||| | | ||  ||||| |||||||||||||| |||||||||||||||||| || |||    
T  3343604 catgcaataagccaagtgtcaagaggaatacatgcagcaagccaaatgttacccatgcaataaaccaagtgtcacgactcatgaggaatacatgtagcaa 3343505  T
Q  140 gccaagtgtca 150  Q
    ||||| |||||    
T  3343504 gccaactgtca 3343494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 3343929 - 3343737
Alignment:
Q  14 aaaccaagtgtcatgactcat---gaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtg 110  Q
    ||||||||||| |||||||||   ||||||||||||||||||||||||||| | |||||||||| | | | ||| | | |   || || |||||||  ||    
T  3343929 aaaccaagtgtgatgactcattaggaatacatgcaacaagccaaatgtcaagaggaatacatgcaggaggacaaatgttaactattcaataaaccacatg 3343830  T
Q  111 tcatgactcatgaggaatacatataacaagccaagtgtcaaaatgaat-tttgcaacaatttaagtgttaccaatacaacaaaccaaatgtca 202  Q
    ||| || ||| |||||||||||  ||||| ||||||||||| ||||||   |||| ||| | |||||||||| || ||| |||||||||||||    
T  3343829 tcacgaatcaggaggaatacatgcaacaaaccaagtgtcaagatgaatacatgcagcaagtcaagtgttacccatgcaataaaccaaatgtca 3343737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 39289949 - 39290006
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    ||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  39289949 atgcaataaaccaagtgtcatgactcatgatgaacacatacaacaagccaagtgtcaa 39290006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 43107946 - 43108002
Alignment:
Q  95 tgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  43107946 tgcaataaaccaagtgtcatgactcatgaggaatacatgcaacaagccaaatgtcaa 43108002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 3343815 - 3343702
Alignment:
Q  35 gaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgactcatgaggaatacatat 134  Q
    ||||||||||||||| |||| |||||| |||||||||||| | ||||||| | | ||  ||||| |||||||| |||||||||| ||   ||||||||      
T  3343815 gaatacatgcaacaaaccaagtgtcaagatgaatacatgcagcaagtcaagtgttacccatgcaataaaccaaatgtcatgactaat---gaatacatgc 3343719  T
Q  135 aacaagccaagtgtcaa 151  Q
    |||||||||||| ||||    
T  3343718 aacaagccaagtttcaa 3343702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 43107952 - 43108011
Alignment:
Q  14 aaaccaagtgtcatgactcatga---atacatgcaacaagccaaatgtcaaaatgaatac 70  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||| | ||||||    
T  43107952 aaaccaagtgtcatgactcatgaggaatacatgcaacaagccaaatgtcaagaggaatac 43108011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 3343749 - 3343689
Alignment:
Q  14 aaaccaagtgtcatgactcatgaatacatgcaacaagccaaatgtcaaaatgaatacatgc 74  Q
    ||||||| |||||||||| |||||||||||||||||||||| | |||| | ||||||||||    
T  3343749 aaaccaaatgtcatgactaatgaatacatgcaacaagccaagtttcaagaggaatacatgc 3343689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 43108177 - 43108256
Alignment:
Q  198 tgtcaagaggaatacaagcaacaaccagatgttacccaagtaataacccaaatatcacgaggaatgcatgcaacaaccca 277  Q
    ||||||||  |||||| ||| ||| ||  |||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  43108177 tgtcaagaataatacatgcatcaatcaagtgttacccatacaataacccaaatgtcacgaggaatgcatgcaacaaccca 43108256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 3343333 - 3343276
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    ||||| |||||||||||| ||||||||||| ||||| ||| |||||||||| ||||||    
T  3343333 atgcaataaaccaagtgttatgactcatgatgaataaatacaacaagccaaatgtcaa 3343276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 3343461 - 3343420
Alignment:
Q  33 atgaatacatgcaacaagccaaatgtcaaaatgaatacatgc 74  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  3343461 atgaatacatgcaacaagccaaatgtcaagaggaatacatgc 3343420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 39290192 - 39290331
Alignment:
Q  22 tgtcatgactcatga---atacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgact 118  Q
    |||||||||||||||   |||||||||| |||  || |||||| | |||||||||  ||||| ||| | |||   ||||| |||||||||||  ||||||    
T  39290192 tgtcatgactcatgagaaatacatgcaaaaagtaaagtgtcaagaggaatacatgtcgtaagccaagtgtcaactatgcaataaaccaagtgcaatgact 39290291  T
Q  119 catgaggaatacatataacaagccaagtgtcaaaatgaat 158  Q
    ||| || |||||||  ||||||||| ||||||||| ||||    
T  39290292 cataagaaatacatgcaacaagccatgtgtcaaaaggaat 39290331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 3343930 - 3343879
Alignment:
Q  100 taaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    |||||||||||| ||||||||| ||||||||||  |||||||||| ||||||    
T  3343930 taaaccaagtgtgatgactcattaggaatacatgcaacaagccaaatgtcaa 3343879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 3344030 - 3343967
Alignment:
Q  90 actaatgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaaaa 153  Q
    ||||||||| ||| |||| ||||||||||||| || |||||||  ||||| |||||||||||||    
T  3344030 actaatgcaataagccaaatgtcatgactcattagaaatacatgcaacaaaccaagtgtcaaaa 3343967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 10982267 - 10982328
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaaaatgaat 158  Q
    ||||| ||||||||||||||||||||||   ||||||||  |||||||||| |||||||| ||||    
T  10982267 atgcaataaaccaagtgtcatgactcat---gaatacatgcaacaagccaaatgtcaaaaggaat 10982328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 3343490 - 3343433
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    ||||| |||||||||||| | ||||||||| ||||||||  |||||||||| ||||||    
T  3343490 atgcaataaaccaagtgttacgactcatgatgaatacatgcaacaagccaaatgtcaa 3343433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 39290136 - 39290172
Alignment:
Q  14 aaaccaagtgtcatgactcatgaatacatgcaacaag 50  Q
    |||| |||||| |||||||||||||||||||||||||    
T  39290136 aaactaagtgtgatgactcatgaatacatgcaacaag 39290172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 273
Target Start/End: Complemental strand, 28950715 - 28950535
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaaaatgaattt-tgcaacaatttaagtgttaccaatacaacaaa 192  Q
    ||||| ||||||||||||  ||||||| |||||||||||| ||||||||||||||||| ||||||   |||||||| |||||| ||||| || |||||||    
T  28950715 atgcaataaaccaagtgttgtgactcacgaggaatacatacaacaagccaagtgtcaagatgaatgaatgcaacaagttaagttttacccatgcaacaaa 28950616  T
Q  193 ccaaatgtcaagaggaatacaagcaacaaccagatgttacccaagtaataacccaaatatcacgaggaatgcatgcaacaa 273  Q
     ||| ||||||||||| |||| ||||||||||  |||||| || | |||||| ||||| ||| || |||||||||||||||    
T  28950615 tcaagtgtcaagaggagtacatgcaacaaccaagtgttactcatgcaataactcaaatgtcatgacgaatgcatgcaacaa 28950535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 3203964 - 3203824
Alignment:
Q  14 aaaccaagtgtcatgactcatga---atacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtg 110  Q
    |||||||||||||||| ||||||   |||||||||||||| ||| ||| || |  ||||||||  | ||||||| | | ||  ||||| ||||||||| |    
T  3203964 aaaccaagtgtcatgaatcatgatgaatacatgcaacaagtcaagtgttaagagaaatacatgtagcaagtcaaatgttacccatgcaataaaccaagcg 3203865  T
Q  111 tcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  3203864 tcatgactcatgaggaatacatccaacaagccaagtgtcaa 3203824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 31860831 - 31860948
Alignment:
Q  35 gaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgactcatgaggaatacatat 134  Q
    |||||||| ||||||||||||||| || | |||| |||||   ||||||| | | ||  ||||| |||| ||||||||||||||||| ||||||||||      
T  31860831 gaatacatacaacaagccaaatgttaagaggaatccatgcaacaagtcaagtgttacccatgcaataaatcaagtgtcatgactcataaggaatacatgc 31860930  T
Q  135 aacaagccaagtgtcaaa 152  Q
    |||||||||| |||||||    
T  31860931 aacaagccaaatgtcaaa 31860948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 35153525 - 35153640
Alignment:
Q  36 aatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgactcatgaggaatacatata 135  Q
    |||||||||||||| |||| |||||| | |||||||| | | ||| ||| ||| ||  ||||| ||||||||||||||||| |||| ||||||||||  |    
T  35153525 aatacatgcaacaaaccaagtgtcaagaggaatacatccaggaagccaagtattacccatgcaataaaccaagtgtcatgattcataaggaatacatgca 35153624  T
Q  136 acaagccaagtgtcaa 151  Q
    || || ||||||||||    
T  35153625 accagtcaagtgtcaa 35153640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 3204054 - 3203917
Alignment:
Q  14 aaaccaagtgtcatgactcatga---atacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtg 110  Q
    |||||||||||||||||||||||   |||||||||| ||| ||| ||| || | ||||||||||    || ||| | | ||  ||||| |||||||||||    
T  3204054 aaaccaagtgtcatgactcatgaggaatacatgcaataagacaagtgtaaagaagaatacatgcatctagccaagtgttacatatgcaataaaccaagtg 3203955  T
Q  111 tcatgactcatgaggaatacatataacaagccaagtgt 148  Q
    |||||| |||||| ||||||||  |||||| |||||||    
T  3203954 tcatgaatcatgatgaatacatgcaacaagtcaagtgt 3203917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 31860656 - 31860767
Alignment:
Q  40 catgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgactcatgaggaatacatataacaa 139  Q
    ||||||||||||||||| |||  | ||||||||||   ||||||| | | ||| ||||| ||||||||||||||  || |||||| |||| ||  |||||    
T  31860656 catgcaacaagccaaatatcaggaggaatacatgcaacaagtcaagtgttactcatgcaataaaccaagtgtcacaacccatgagaaatatatgcaacaa 31860755  T
Q  140 gccaagtgtcaa 151  Q
    ||||||||||||    
T  31860756 gccaagtgtcaa 31860767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 3204061 - 3204023
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacat 132  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  3204061 atgcaataaaccaagtgtcatgactcatgaggaatacat 3204023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 3203780 - 3203637
Alignment:
Q  18 caagtgtcatgactcatga---atacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcat 114  Q
    |||||||||||||||||||   ||||| |||||||| ||| | |||| | ||||||||||   ||||||| | | |   ||||| ||||||||||||||     
T  3203780 caagtgtcatgactcatgaggaatacaggcaacaagtcaagtctcaagaggaatacatgcaacaagtcaactgttatccatgcaataaaccaagtgtcac 3203681  T
Q  115 gactcatgaggaatacatataacaagccaagtgtcaaaatgaat 158  Q
    |||| || ||||||||||  ||||||| |||||| ||| |||||    
T  3203680 gacttataaggaatacatggaacaagcaaagtgtgaaattgaat 3203637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 31860901 - 31860948
Alignment:
Q  18 caagtgtcatgactcat---gaatacatgcaacaagccaaatgtcaaa 62  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||    
T  31860901 caagtgtcatgactcataaggaatacatgcaacaagccaaatgtcaaa 31860948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 31861143 - 31861199
Alignment:
Q  297 gaggattacatgcaacaagccaaatgttattcatgctttaaaatatatttctctctt 353  Q
    |||||||||||||||||| |||||||||||||||||  ||||| |||| ||| ||||    
T  31861143 gaggattacatgcaacaaaccaaatgttattcatgcaataaaacatatctctttctt 31861199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 31861895 - 31861948
Alignment:
Q  378 ttatttatgtgattgttaata-ttttaataatgaacttttacagaaataattta 430  Q
    |||||||||||||||||| || ||||||||||||| |||||||  |||||||||    
T  31861895 ttatttatgtgattgttattatttttaataatgaatttttacatgaataattta 31861948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 31861073 - 31861109
Alignment:
Q  239 aataacccaaatatcacgaggaatgcatgcaacaacc 275  Q
    |||||||||||||||| |||||||| |||||||||||    
T  31861073 aataacccaaatatcatgaggaatgtatgcaacaacc 31861109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 277
Target Start/End: Original strand, 9846151 - 9846335
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaaaatgaattt-tgcaacaatttaagtgttaccaatacaacaaa 192  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||||   ||||   || |||||  ||||||||||| ||||||||||    
T  9846151 atgcaataaaccaagtgtcatgactcacgaggaatacatacaacaagccatgtgtcaagtggaatgcatgaaacaagctaagtgttacccatacaacaaa 9846250  T
Q  193 ccaaatgtcaagaggaatacaagcaacaaccagatgttacccaagtaataacccaaatatcacgaggaatgcatgcaacaaccca 277  Q
    |||| ||| ||||  |||||| ||||||||||  ||||| ||| | |||||||||||| ||  ||||||| ||| ||||||||||    
T  9846251 ccaagtgttaagaaaaatacatgcaacaaccaattgttatccacgcaataacccaaatgtcgtgaggaatacatacaacaaccca 9846335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 3547085 - 3547019
Alignment:
Q  18 caagtgtcatgactcatgaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaa 84  Q
    |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| | |||||||    
T  3547085 caagtgtcatgactcacgaatacatgcaacaagccaagtgtcaagatgaatacatgcagcaagtcaa 3547019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 9845972 - 9846087
Alignment:
Q  35 gaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgactcatgaggaatacatat 134  Q
    ||||||||||||||| ||||||||||| |||  ||||||| ||||| ||| | | ||  || || ||||||||||||| ||||||||| ||||||| ||     
T  9845972 gaatacatgcaacaacccaaatgtcaagatgt-tacatgcagtaagccaagtgttacccatacaataaaccaagtgtcttgactcatgtggaatacgtac 9846070  T
Q  135 aacaagccaagtgtcaa 151  Q
    || ||  ||||||||||    
T  9846071 aataaatcaagtgtcaa 9846087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 12513303 - 12513166
Alignment:
Q  14 aaaccaagtgtcatgactcatgaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtca 113  Q
    ||||||||||||||||||||||||||||||| |||||  || |||||| | |||||||| |   | ||||| | | ||  ||||| ||||||||||||||    
T  12513303 aaaccaagtgtcatgactcatgaatacatgccacaagttaagtgtcaataggaatacattcacgatgtcaagtgttacacatgcaataaaccaagtgtca 12513204  T
Q  114 tgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    ||||| |||| ||||||||  |||||  ||||||||||    
T  12513203 tgacttatgaagaatacatgcaacaattcaagtgtcaa 12513166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 12513126 - 12513066
Alignment:
Q  14 aaaccaagtgtcatgactcatgaatacatgcaacaagccaaatgtcaaaatgaatacatgc 74  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||    
T  12513126 aaaccaagtgtcatgactcatgaatacatgcaacaatccaagtgtcaagaggaatacatgc 12513066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 30840310 - 30840222
Alignment:
Q  190 aaaccaaatgtcaagaggaatacaagcaacaaccagatgttacccaagtaataacccaaatatcacgagg-aatgcatgcaacaaccca 277  Q
    ||||||||||||||||  |||||| ||||||||||  ||||||||| |  ||||||||||| |||||||| ||||||||||||||||||    
T  30840310 aaaccaaatgtcaagaaaaatacatgcaacaaccaagtgttacccatgccataacccaaatgtcacgaggaaatgcatgcaacaaccca 30840222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 18960492 - 18960605
Alignment:
Q  18 caagtgtcatgactcatgaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgac 117  Q
    |||||||||||||| || ||||||| ||||||| ||| |||||| | |||||||||| | ||||||| | ||||  ||||| ||||||||||||||  ||    
T  18960492 caagtgtcatgactaattaatacatacaacaagtcaagtgtcaagaggaatacatgc-gaaagtcaagtgtcacccatgcaataaaccaagtgtcacaac 18960590  T
Q  118 tcatgaggaatacat 132  Q
    ||||||| |||||||    
T  18960591 tcatgagaaatacat 18960605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 18960688 - 18960800
Alignment:
Q  35 gaatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgactcatgaggaatacatat 134  Q
    |||||||||||||||||||| |||||| | ||||||||||  |||||||| | |  |  ||||| |||| ||| |||||||| ||||||||||  ||||     
T  18960688 gaatacatgcaacaagccaagtgtcaagaggaatacatgcattaagtcaagtgttgc-catgcaataaatcaattgtcatgattcatgaggaaaccatac 18960786  T
Q  135 aacaagccaagtgt 148  Q
    ||||||||||||||    
T  18960787 aacaagccaagtgt 18960800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 18960657 - 18960714
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    ||||| ||||| || ||||| ||||||||||||||||||  |||||||||||||||||    
T  18960657 atgcaataaactaaatgtcacgactcatgaggaatacatgcaacaagccaagtgtcaa 18960714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 10928086 - 10928036
Alignment:
Q  101 aaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    |||||||||||||||||||| ||| |||||||  || ||||||||||||||    
T  10928086 aaaccaagtgtcatgactcaggagaaatacatgcaataagccaagtgtcaa 10928036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 10927963 - 10927875
Alignment:
Q  186 caacaaaccaaatgtcaagaggaatacaagcaacaaccagatgttacccaagtaataacccaaatatcacgaggaatgcatgcaacaac 274  Q
    ||||||| ||| |||||||| ||||||| ||| | ||||  ||||||||| | |||||| ||||| | | ||| |||||||||||||||    
T  10927963 caacaaatcaagtgtcaagaagaatacatgcatcgaccaagtgttacccatgcaataactcaaatgttatgagaaatgcatgcaacaac 10927875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 35711696 - 35711783
Alignment:
Q  186 caacaaaccaaatgtcaagaggaatacaagcaacaaccagatgttacccaagtaataacccaaatatcacgaggaatgcatgcaacaa 273  Q
    ||||||||||| ||||||||  |||||  |||||||||   ||||||||| | |||||||||||| ||||||||||||||||||||||    
T  35711696 caacaaaccaagtgtcaagatcaatacttgcaacaacctagtgttacccatgcaataacccaaatgtcacgaggaatgcatgcaacaa 35711783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 35687259 - 35687394
Alignment:
Q  14 aaaccaagtgtcatgactcatga---atacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtg 110  Q
    |||||||||||||||||| || |   || ||||||| ||  ||||| |||| | |||||||||| | ||| ||| | ||||  ||||| |||| ||||||    
T  35687259 aaaccaagtgtcatgacttataagaaatgcatgcaataattcaaatttcaagaggaatacatgcagcaagccaagtgtcacccatgcaataaatcaagtg 35687358  T
Q  111 tcatgactcatgaggaatacatataacaagccaagt 146  Q
    |||||||||||||| |||||||  ||||||||||||    
T  35687359 tcatgactcatgagaaatacatgcaacaagccaagt 35687394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 11879753 - 11879667
Alignment:
Q  36 aatacatgcaacaagccaaatgtcaaaatgaatacatgcggtaagtcaattatcactaatgcagtaaaccaagtgtcatgactcatg 122  Q
    ||||||||||||||| ||  ||| |||| |||||||||||| || |||||  | || |||||| ||||| |||||||||||||||||    
T  11879753 aatacatgcaacaagtcaggtgttaaaaggaatacatgcggcaaatcaatagttaccaatgcaataaacaaagtgtcatgactcatg 11879667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 11879954 - 11879898
Alignment:
Q  100 taaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaaaatga 156  Q
    |||||||| |||||||| |||||||||||||||  |||||||||||| |||| ||||    
T  11879954 taaaccaaatgtcatgattcatgaggaatacatgcaacaagccaagtatcaagatga 11879898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 18483957 - 18483895
Alignment:
Q  14 aaaccaagtgtcatgactcatga---atacatgcaacaagccaaatgtcaaaatgaatacatg 73  Q
    ||||||||||||||||||||| |   |||| |||||||| ||||||||||| |||||||||||    
T  18483957 aaaccaagtgtcatgactcataataaatacgtgcaacaaaccaaatgtcaatatgaatacatg 18483895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 11880043 - 11879993
Alignment:
Q  102 aaccaagtgtcatgactcatgaggaatacata-taacaagccaagtgtcaa 151  Q
    ||||||||| ||||||||||||||||||||||  |||||| ||||||||||    
T  11880043 aaccaagtgacatgactcatgaggaatacatacaaacaagtcaagtgtcaa 11879993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 18483194 - 18483148
Alignment:
Q  105 caagtgtcatgactcatgaggaatacatataacaagccaagtgtcaa 151  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||    
T  18483194 caagtgtcatgacttatgaggaatacatgcaacaaaccaagtgtcaa 18483148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 38179661 - 38179699
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacat 132  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  38179661 atgcaataaaccaagtgtcatgactcatgagaaatacat 38179699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 35687161 - 35687226
Alignment:
Q  93 aatgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaaaatgaat 158  Q
    |||||| ||||| ||||||||| |||||||||||||||||  |||| |||| || |||||| ||||    
T  35687161 aatgcaataaactaagtgtcataactcatgaggaatacatgcaacaggccatgtttcaaaaggaat 35687226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 38179668 - 38179731
Alignment:
Q  14 aaaccaagtgtcatgactcatg---aatacatgcaacaagccaaatgtcaaaatgaatacatgc 74  Q
    ||||||||||||||||||||||   ||||||||||||| |||| ||||||| | ||||| ||||    
T  38179668 aaaccaagtgtcatgactcatgagaaatacatgcaacatgccagatgtcaagaggaatatatgc 38179731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 18483924 - 18483832
Alignment:
Q  186 caacaaaccaaatgtcaagaggaatacaagcaacaa-ccagatgttacccaagtaataacccaaatatcacgaggaatgcatgcaacaaccca 277  Q
    |||||||||||||||||| | ||||||| | ||||| |||  |||||||||   |||||||||||| |||  | ||||||||||| |||||||    
T  18483924 caacaaaccaaatgtcaatatgaatacatgaaacaatccatgtgttacccattcaataacccaaatgtcataaagaatgcatgcagcaaccca 18483832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 35711567 - 35711631
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaagtgtcaaaatgaat 158  Q
    ||||| |||| |||||||||||| || ||||||||||||  |||| | |||||||||||| ||||    
T  35711567 atgcaataaatcaagtgtcatgattcgtgaggaatacatgcaacatgtcaagtgtcaaaaggaat 35711631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 9321645 - 9321595
Alignment:
Q  94 atgcagtaaaccaagtgtcatgactcatgaggaatacatataacaagccaa 144  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  9321645 atgcaataaaccaagtgtcatgactcatgaggaatacatacaacaagccaa 9321595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 9321638 - 9321575
Alignment:
Q  14 aaaccaagtgtcatgactcat---gaatacatgcaacaagccaaatgtcaaaatgaatacatgc 74  Q
    |||||||||||||||||||||   |||||||| |||||||||||| | ||| | ||||||||||    
T  9321638 aaaccaagtgtcatgactcatgaggaatacatacaacaagccaaaagccaagaagaatacatgc 9321575  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 8037661 - 8037740
Alignment:
Q  198 tgtcaagaggaatacaagcaacaaccagatgttacccaagtaataacccaaatatcacgaggaatgcatgcaacaaccca 277  Q
    ||||||||  |||||| ||||| |||| ||||||| || | ||||| |||||| ||| ||||||||||||||||||||||    
T  8037661 tgtcaagaaaaatacatgcaacgaccaaatgttactcatgaaataaaccaaatctcatgaggaatgcatgcaacaaccca 8037740  T

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