View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6527_high_25 (Length: 209)
Name: NF6527_high_25
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6527_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 43620463 - 43620603
Alignment:
| Q |
19 |
aggaggcaagtcacccctcataatatttgatgatgctgatattgaaaaagcta-ctgaacttgctctattaggcatcctatttaacaaggtgatatatat |
117 |
Q |
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| T |
43620463 |
aggaggcaagtcacccctcataatatttgatgatgctgatattgacaaagctatctgaacttgctctattaggcatcctatttaacaaggtgatatata- |
43620561 |
T |
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| Q |
118 |
attgattgcttcatgagatcctttctttttaaacatcttaat |
159 |
Q |
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| T |
43620562 |
atataatgcttcatgagatcctttctttttaaacatcttaat |
43620603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 43620623 - 43620657
Alignment:
| Q |
160 |
gccaacctttcatttttcctttttctgaacacagg |
194 |
Q |
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| T |
43620623 |
gccaacctttcatttttcctttttctgaacacagg |
43620657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 32407475 - 32407384
Alignment:
| Q |
19 |
aggaggcaagtcacccctcataatatttgatgatgctgatattgaaaaagctactgaacttgctctattaggcatcctatttaacaaggtga |
110 |
Q |
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| T |
32407475 |
aggaggaaaatcacccctcttaatttttgatgatgctgatgttaataaagctgctgaacttgctctccttggcattttatttaataaggtga |
32407384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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