View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6527_low_1 (Length: 1025)
Name: NF6527_low_1
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6527_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 902; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 902; E-Value: 0
Query Start/End: Original strand, 13 - 1008
Target Start/End: Original strand, 99399 - 100395
Alignment:
| Q |
13 |
catcatcatcccccaaagtttctcctagtgcttctcctactatcttgtcttcacctaaaataagcgagcttcatgaacttccaaggcctccagccaattc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
99399 |
catcatcatcccccaaagtttctcctagtgcttctcctactatcttgtcttcacctaaaataagcgagcttcatgaacttccaaggcctccagccaattc |
99498 |
T |
|
| Q |
113 |
cccgcccaactctaggcttttaggtttgatggggcattcaggtccattagtgtctagatgtcaaaatgtttccgctgcaaataatttggttgtttcaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
99499 |
cccgcccaactctaggcttttaggtttgatggggcattcaggtccattagtgtctagaggtcaaaatgtttccgctgcaaataatttggttgtttcaagt |
99598 |
T |
|
| Q |
213 |
gtagcatctccactgccaatgccaccgcaggctatgtctcgtagtttctctataccttcttctggtagtgctcgagttgcagcattaaatgggccaaggg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
99599 |
gtagcatctccactgccaatgccaccgcaggctatgtctcgtagtttctctataccttcttctggtagtgctcgagttgcagcattaa-tgggccaaggg |
99697 |
T |
|
| Q |
313 |
gacgagaatcctctcatacatcatctctatccgaggaaattgcttctcctccgctaacgccaattgcattatcaagtagtcggccgtcattagatggctg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
99698 |
gacgagaatcctctcatacatcatctctatccgaggaaattgcttctcctccgctaacgccaattgcattatcaagtagtcggccgtcattagatggctg |
99797 |
T |
|
| Q |
413 |
aggctgttgctctggatgtttgggccggaggtaataattaaaacagnnnnnnnnnnnnnnnn--cttcatnnnnnnncctttctcttgtatacttttatt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
99798 |
aggctgttgctctggatgtttgggccggaggtaataattaaaacagtttttttttttttcttttcttcataaaaaaacctttctcttgtatacttttatt |
99897 |
T |
|
| Q |
511 |
ttgttttgttggacttgttcatgcatttgctgttatttatgaaatttgactatggaagaggttaggtttcttgtacaaatggagaaacctttgttagatc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
99898 |
ttgttttgttggacttgttcatgcatttgctgttatttatgaaatttgactatggaagaggttaggtttcttgtacaaatggagaaacctttgttagatc |
99997 |
T |
|
| Q |
611 |
atgtgccattaataaatatcataggagaaccagacaggttaggccagtctcttaagcaggtagttatgtagatatgcttgtgttggcagttatgtgtttt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
99998 |
atgtgccattaataaatatcataggagaaccagacaggttaggccagtctcttaagcaggtagttatgtagatatgcttgtgttggcagttatgtgtttt |
100097 |
T |
|
| Q |
711 |
aagaattataacaaattaggaattgtggaaaagaggggtcattcgattatttggatagaggactggaagggagagaccaaaaatctcgaacttatctcaa |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
100098 |
aagaattataacaaattaggaattgtggaaaagaggggtcattcgattatttggatagaggactggaagggagagaccaaaaatctcgaacttatctcaa |
100197 |
T |
|
| Q |
811 |
ttttttagaagcagaatccagtgtttaccgataataatcttcttgtttattttctaaataaacagtatagataccagtttatatcaactggtatcagagc |
910 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
100198 |
ttttttagaagcagaatccagtgtttaccgataataatcttcttgtttcttttctaaataaacagtatagataccagtttatatcaactggtatcagagc |
100297 |
T |
|
| Q |
911 |
atcgatcttggaactatgatacatcataccagaaatggagatttcggtgtttgacatcgtcgatgatgcctactggtggctattttgcaccgataaat |
1008 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
100298 |
atcgatcttggaactatgatacatcataccagaaatggagatttcggtgtttgacatcgtcgatgatgcctactggtggctattttgcaccgataaat |
100395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 605 - 800
Target Start/End: Original strand, 101573 - 101770
Alignment:
| Q |
605 |
tagatcatgtgccattaataaatatcataggagaaccagacaggttaggccagtctcttaagcaggtagttatgtagatatgcttgtgt--tggcagtta |
702 |
Q |
| |
|
||||||| ||| |||||||||||||||| ||||| |||| ||||| |||||||||||||||| |||| |||||| || |||| |||||| | |||||| |
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|
| T |
101573 |
tagatcacgtgtcattaataaatatcattggagagccaggcaggtcaggccagtctcttaagtaggtggttatgcagttatgtttgtgtggtaacagtta |
101672 |
T |
|
| Q |
703 |
tgtgttttaagaattataacaaattaggaa-ttgtggaaaagaggggtcattcgattatttggatagaggactggaagggagagaccaaaaatctcgaa |
800 |
Q |
| |
|
|||| ||| ||| | || ||||| |||| ||||||| |||| |||||| | ||||||| ||| |||| ||||||||||||||||| | ||||||| |
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|
| T |
101673 |
tgtg-tttgtgaaatgtagtaaattgggaagttgtggagaagaagggtcaatttgttatttgaataaaggattggaagggagagaccaagactctcgaa |
101770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 804 - 896
Target Start/End: Original strand, 101809 - 101900
Alignment:
| Q |
804 |
atctcaattttttagaagcagaatccagtgtttaccgataataatcttcttgtttattttctaaataaacagtatagataccagtttatatca |
896 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||||||| |||||||||| | |||| |||||| | ||||||||||||||| ||||| |
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|
| T |
101809 |
atctcaattttct-gaagcagaatccagtgtttacttataataaacttcttgtttctcttctgaataaagaatatagataccagtttctatca |
101900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 892 - 924
Target Start/End: Original strand, 13077676 - 13077708
Alignment:
| Q |
892 |
tatcaactggtatcagagcatcgatcttggaac |
924 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
13077676 |
tatcaactggtatcagagcatcgatcttggaac |
13077708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 618 - 726
Target Start/End: Original strand, 2074591 - 2074700
Alignment:
| Q |
618 |
attaataaatatcataggagaaccagacaggttaggccagtctcttaagcaggtagttatgtagatatgct-tgtgttggcagttatgtgttttaagaat |
716 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| || || | |||||| |||||| ||||||| |||||| |
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|
| T |
2074591 |
attaataaatatcataggagaaccaggcaggttagggtggtctcttagttaggtagttatgcagttacattgtgtgttagcagttgtgtgtttcaagaat |
2074690 |
T |
|
| Q |
717 |
tataacaaat |
726 |
Q |
| |
|
| ||| |||| |
|
|
| T |
2074691 |
tgtaataaat |
2074700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 887 - 924
Target Start/End: Complemental strand, 54938838 - 54938801
Alignment:
| Q |
887 |
gtttatatcaactggtatcagagcatcgatcttggaac |
924 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
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|
| T |
54938838 |
gtttctatcaactggtatcagagcatcgatcttggaac |
54938801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 892 - 924
Target Start/End: Complemental strand, 39984808 - 39984776
Alignment:
| Q |
892 |
tatcaactggtatcagagcatcgatcttggaac |
924 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39984808 |
tatcaactggtatcagagcatcgatcttggaac |
39984776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 892 - 924
Target Start/End: Original strand, 14684702 - 14684734
Alignment:
| Q |
892 |
tatcaactggtatcagagcatcgatcttggaac |
924 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14684702 |
tatcaactggtatcagagcatcgatcttggaac |
14684734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 892 - 924
Target Start/End: Original strand, 40421526 - 40421558
Alignment:
| Q |
892 |
tatcaactggtatcagagcatcgatcttggaac |
924 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
40421526 |
tatcaactggtatcagagcatcgatcttggaac |
40421558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 892 - 922
Target Start/End: Original strand, 21306558 - 21306588
Alignment:
| Q |
892 |
tatcaactggtatcagagcatcgatcttgga |
922 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21306558 |
tatcaactggtatcagagcatcgatcttgga |
21306588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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