View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6527_low_14 (Length: 278)
Name: NF6527_low_14
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6527_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4817670 - 4817931
Alignment:
| Q |
1 |
tttatccttcttaggttcggcttattccaagtctgatcgcttctttgtagaaggtgttgtttactgtgacacatgtcgcacccaattcatcaccagattg |
100 |
Q |
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| T |
4817670 |
tttatccttcttaggttcggcttattccaagtctgatcgcttctttgtagaaggtgttgtttactgtgacacatgtcgcacccaattcatcaccagattg |
4817769 |
T |
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| Q |
101 |
accgagttcattgaaggtacgcgcatattttttaacatgaatctatgaagcacatatacttattgaattatgtgtgttccggtatcaaatatatatagtg |
200 |
Q |
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| T |
4817770 |
accgagttcattgaaggtacgtacatattttttaacatgaatctatgaagcacatatactcattgaattatgcgtgttccggtatcaaatatgtatcatg |
4817869 |
T |
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| Q |
201 |
ttcgataccaacacacaccgtcacatatatgtcattttcttaaattattatcgatgttcaca |
262 |
Q |
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| T |
4817870 |
ttcgacaccaacacacactgtcacatatatgtcaatttcttaaattattatcgatgttcaca |
4817931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 18622445 - 18622416
Alignment:
| Q |
228 |
tatgtcattttcttaaattattatcgatgt |
257 |
Q |
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| T |
18622445 |
tatgtcattttcttaaattattatcgatgt |
18622416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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