View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6527_low_16 (Length: 272)
Name: NF6527_low_16
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6527_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 44043903 - 44044137
Alignment:
| Q |
1 |
ttattcgatgtggaacatataactacacttgcaaaccaacacaagattctaactctgattttggtctaaacctccatcatgattcatgatgatgacatca |
100 |
Q |
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| T |
44043903 |
ttattcgatgtgggacatataactacacttgcaaaccaacacaagattctaactgtgattttggtctaaacctccatcat-------gatgatgacatca |
44043995 |
T |
|
| Q |
101 |
ttctatagatgtttataaaggtgaaattgactgagtgaaaatttaggcagggacaaacgtattcattcatgatattaatcatttgannnnnnnngtcaag |
200 |
Q |
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| T |
44043996 |
ttctatagatgtttataaaggtgaaattgacggagtgaaaatttaggcagggacaaacgtattcatttatgatattaatcatttga-tttttttgtcaag |
44044094 |
T |
|
| Q |
201 |
ataatttaacaatagagtaataatatttgtacaatcatttgat |
243 |
Q |
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| T |
44044095 |
ataatttaacaatagagtaataatatttgtacaatcatttgat |
44044137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 25586551 - 25586583
Alignment:
| Q |
211 |
aatagagtaataatatttgtacaatcatttgat |
243 |
Q |
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| T |
25586551 |
aatagagtaatgatatttgtacaatcatttgat |
25586583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1013996 - 1014038
Alignment:
| Q |
1 |
ttattcgatgtggaacatataact-acacttgcaaaccaacac |
42 |
Q |
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| T |
1013996 |
ttatccgatgtggaacatataactcacacttgcaaaccaacac |
1014038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5660331 - 5660290
Alignment:
| Q |
1 |
ttattcgatgtggaacatataact-acacttgcaaaccaaca |
41 |
Q |
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| T |
5660331 |
ttattcgatgtggaacatataactcacatttgcaaaccaaca |
5660290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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