View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6527_low_17 (Length: 253)

Name: NF6527_low_17
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6527_low_17
NF6527_low_17
[»] chr7 (13 HSPs)
chr7 (117-240)||(4700953-4701076)
chr7 (119-240)||(4704416-4704537)
chr7 (118-244)||(4834011-4834136)
chr7 (6-119)||(4700814-4700932)
chr7 (119-221)||(4788712-4788817)
chr7 (134-231)||(4715333-4715432)
chr7 (177-237)||(4705886-4705946)
chr7 (75-203)||(4714527-4714664)
chr7 (134-200)||(4790025-4790093)
chr7 (134-199)||(4818410-4818477)
chr7 (4-49)||(4714482-4714528)
chr7 (75-117)||(4705731-4705773)
chr7 (4-47)||(4704318-4704362)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 4700953 - 4701076
Alignment:
Q  117 ttttttctatttcaaagaagacgttttggagctttctccgtgactattttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtct 216  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |    
T  4700953 ttttttttatttcaaagaagacgttttggagctttctctgtgactattttaaatatcttagatggcaaaatattccaaagacttcaccaagtcttcgtat 4701052  T
Q  217 tcactcaggcatccactttatatt 240  Q
    |||||| |||||||||||||||||    
T  4701053 tcactcgggcatccactttatatt 4701076  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 4704416 - 4704537
Alignment:
Q  119 ttttctatttcaaagaagacgttttggagctttctccgtgactattttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtcttc 218  Q
    |||||||||| ||| |||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4704416 ttttctatttaaaataagacgttttggtgctttctccgtgactgtttaaaatatctttgataccaaaatattccaaagacttcaccaagtcttcgtcttc 4704515  T
Q  219 actcaggcatccactttatatt 240  Q
    ||||  ||| | ||||||||||    
T  4704516 actcgagcaacaactttatatt 4704537  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 4834011 - 4834136
Alignment:
Q  118 tttttctatttcaaagaagacgttttggagctttctccgtgactattttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtctt 217  Q
    ||||||| ||| ||| ||||||||| |||||||||||| ||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  4834011 tttttctttttaaaataagacgttt-ggagctttctccatgactgttataaatatcttagatgccaaaatattctaaagacttcaccaagtcttcgtctt 4834109  T
Q  218 cactcaggcatccactttatattcttc 244  Q
    ||||| ||||| || ||||||||||||    
T  4834110 cactcgggcatgcagtttatattcttc 4834136  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 4700814 - 4700932
Alignment:
Q  6 gatttggaatttttcttagaaaaataaacatgttaatatcttagnnnnnnnnnagaggaatgcaatatc--agttgtcttgccccg---tatgtggtcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||         || |||||||||||||  |||||||||||||||   |||||||||||    
T  4700814 gatttggaatttttcttagaaaaataaacatgttaatatcttagtttttttttaggggaatgcaatatcttagttgtcttgccccgtattatgtggtcac 4700913  T
Q  101 aaattaacaaaaatggttt 119  Q
    |||||||||||||||||||    
T  4700914 aaattaacaaaaatggttt 4700932  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 4788712 - 4788817
Alignment:
Q  119 ttttctatttcaaagaagacgttttggagctttctccgtgactattttaaata---tcttagataccaaaatattccaaagacttcaccaagtcttcgtc 215  Q
    |||||||||  |||||||||||||||||||||||| | |||||  ||||||||   |||| |||||||||| ||||||||||||||||||||||||||||    
T  4788712 ttttctattgaaaagaagacgttttggagctttcttcctgactgctttaaatactatcttggataccaaaacattccaaagacttcaccaagtcttcgtc 4788811  T
Q  216 ttcact 221  Q
    ||||||    
T  4788812 ttcact 4788817  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 4715333 - 4715432
Alignment:
Q  134 aagacgttttggagctttctccgtgactat--tttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtcttcactcaggcatcca 231  Q
    |||||||||||||||||||| |||||||||  ||||| |||||||||| ||||||| |||| |||||||||||||||||||||||| ||||  |||||||    
T  4715333 aagacgttttggagctttctgcgtgactatgctttaattatcttagatgccaaaatgttcctaagacttcaccaagtcttcgtctttactcgagcatcca 4715432  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 4705886 - 4705946
Alignment:
Q  177 gataccaaaatattccaaagacttcaccaagtcttcgtcttcactcaggcatccactttat 237  Q
    |||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  4705886 gataccaaaacattccaaagacttcaccaagtcttcgtcttcactcgagcatccactttat 4705946  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 4714527 - 4714664
Alignment:
Q  75 agttgtcttgccccgtatgtggtcacaaattaacaaaaatggtt-------ttttctatttcaaagaagacgttttggagctttctccgtgactatttta 167  Q
    ||||||| ||||| |||||||||||||| |||||||||||||         |||||||||| |||  ||||||||||||||||||||||||||| || ||    
T  4714527 agttgtcatgccctgtatgtggtcacaatttaacaaaaatgggccaaatacttttctatttaaaaagagacgttttggagctttctccgtgacttttata 4714626  T
Q  168 aatat--cttagataccaaaatattccaaagacttcac 203  Q
     || |  ||||||| |||||||||||| ||||||||||    
T  4714627 tatcttacttagatgccaaaatattcccaagacttcac 4714664  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 4790025 - 4790093
Alignment:
Q  134 aagacgttttggagctttctccgtgactat--tttaaatatcttagataccaaaatattccaaagactt 200  Q
    |||||||||| ||||||||| |||||||||  ||||| |||||||||| ||||||| ||||||||||||    
T  4790025 aagacgttttcgagctttctgcgtgactatgctttaattatcttagatgccaaaatgttccaaagactt 4790093  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 4818410 - 4818477
Alignment:
Q  134 aagacgttttggagctttctccgtgactat--tttaaatatcttagataccaaaatattccaaagact 199  Q
    |||||||||||||||||||| |||||||||  | ||| |||||||||| ||||||| |||||||||||    
T  4818410 aagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagact 4818477  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 4714482 - 4714528
Alignment:
Q  4 gtgatttggaatttttcttagaaaaa-taaacatgttaatatcttag 49  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||    
T  4714482 gtgatttggaatttttcttagaaaaattaaacatgctaatatcttag 4714528  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 4705731 - 4705773
Alignment:
Q  75 agttgtcttgccccgtatgtggtcacaaattaacaaaaatggt 117  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  4705731 agttgtcttgccttgtatgtggtcacaaattaacaaaattggt 4705773  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 4704318 - 4704362
Alignment:
Q  4 gtgatttggaatttttcttagaaaaa-taaacatgttaatatctt 47  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||    
T  4704318 gtgatttggaatttttcttggaaaaattaaacatgctaatatctt 4704362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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