View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6527_low_19 (Length: 249)

Name: NF6527_low_19
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6527_low_19
NF6527_low_19
[»] chr3 (19 HSPs)
chr3 (4-234)||(5498404-5498634)
chr3 (12-178)||(27713391-27713554)
chr3 (17-182)||(9633398-9633564)
chr3 (64-182)||(16457335-16457453)
chr3 (89-181)||(27259474-27259566)
chr3 (44-158)||(2550168-2550282)
chr3 (44-161)||(1654575-1654692)
chr3 (44-163)||(13845989-13846108)
chr3 (44-161)||(7407738-7407855)
chr3 (44-163)||(1627931-1628050)
chr3 (61-180)||(26707839-26707958)
chr3 (80-165)||(1613233-1613318)
chr3 (44-143)||(2943198-2943297)
chr3 (27-139)||(36035310-36035423)
chr3 (101-183)||(36034996-36035078)
chr3 (103-183)||(36035449-36035529)
chr3 (69-183)||(24993326-24993440)
chr3 (84-136)||(35083000-35083052)
chr3 (27-113)||(26735681-26735768)
[»] chr4 (16 HSPs)
chr4 (4-182)||(24558938-24559117)
chr4 (44-163)||(47066018-47066137)
chr4 (63-190)||(4881072-4881199)
chr4 (44-163)||(53300348-53300467)
chr4 (80-190)||(4904160-4904270)
chr4 (44-158)||(43600269-43600383)
chr4 (57-163)||(1684949-1685055)
chr4 (117-190)||(4923690-4923763)
chr4 (82-153)||(48464047-48464118)
chr4 (61-143)||(21539273-21539354)
chr4 (7-173)||(45641640-45641804)
chr4 (57-163)||(1152041-1152147)
chr4 (101-178)||(26075291-26075368)
chr4 (84-185)||(37751014-37751114)
chr4 (64-181)||(2549239-2549356)
chr4 (85-163)||(26075222-26075300)
[»] chr1 (17 HSPs)
chr1 (4-181)||(12189931-12190109)
chr1 (80-181)||(28636882-28636983)
chr1 (56-163)||(16222775-16222882)
chr1 (80-182)||(897433-897535)
chr1 (80-182)||(5911684-5911786)
chr1 (64-140)||(3399642-3399718)
chr1 (64-183)||(20427737-20427856)
chr1 (57-148)||(13208624-13208715)
chr1 (80-163)||(15214324-15214407)
chr1 (44-163)||(51758750-51758869)
chr1 (84-181)||(17112904-17113001)
chr1 (25-181)||(18308127-18308284)
chr1 (91-163)||(37097371-37097443)
chr1 (83-181)||(39368663-39368761)
chr1 (80-141)||(15204613-15204674)
chr1 (80-131)||(1843981-1844032)
chr1 (101-163)||(15193916-15193978)
[»] chr6 (26 HSPs)
chr6 (1-169)||(34374816-34374987)
chr6 (44-181)||(29667899-29668038)
chr6 (44-161)||(16734804-16734921)
chr6 (61-181)||(23264497-23264619)
chr6 (57-163)||(12591830-12591936)
chr6 (64-161)||(15361714-15361811)
chr6 (16-183)||(4485520-4485688)
chr6 (44-161)||(11936751-11936868)
chr6 (83-178)||(9631178-9631273)
chr6 (101-179)||(6673660-6673737)
chr6 (44-148)||(11948731-11948835)
chr6 (44-163)||(6684091-6684209)
chr6 (29-163)||(14669314-14669449)
chr6 (64-181)||(1942548-1942665)
chr6 (80-177)||(23904372-23904469)
chr6 (104-163)||(15690435-15690494)
chr6 (57-163)||(17719720-17719826)
chr6 (80-179)||(10935801-10935901)
chr6 (64-181)||(6346862-6346979)
chr6 (117-186)||(7913458-7913528)
chr6 (80-163)||(2941002-2941086)
chr6 (64-178)||(9236011-9236126)
chr6 (81-172)||(4591138-4591229)
chr6 (101-139)||(30481269-30481307)
chr6 (101-141)||(10070674-10070714)
chr6 (150-178)||(30129741-30129769)
[»] chr2 (17 HSPs)
chr2 (16-183)||(41573370-41573538)
chr2 (44-163)||(30267000-30267119)
chr2 (44-181)||(24479131-24479268)
chr2 (44-163)||(44920955-44921073)
chr2 (27-176)||(11017441-11017591)
chr2 (44-161)||(31342700-31342817)
chr2 (64-163)||(15513664-15513763)
chr2 (57-163)||(7718182-7718288)
chr2 (80-180)||(7702409-7702509)
chr2 (62-181)||(22966502-22966623)
chr2 (80-137)||(40016614-40016671)
chr2 (7-182)||(15540244-15540421)
chr2 (102-181)||(7724869-7724946)
chr2 (116-181)||(24846949-24847015)
chr2 (80-179)||(26734732-26734828)
chr2 (104-172)||(27151276-27151343)
chr2 (133-181)||(32265917-32265965)
[»] chr5 (33 HSPs)
chr5 (80-181)||(9333581-9333682)
chr5 (80-181)||(9354409-9354510)
chr5 (44-163)||(17037540-17037659)
chr5 (101-181)||(18191890-18191970)
chr5 (80-163)||(31068983-31069065)
chr5 (44-161)||(5079048-5079165)
chr5 (81-182)||(10869416-10869516)
chr5 (29-181)||(30786246-30786399)
chr5 (44-161)||(7410823-7410940)
chr5 (80-181)||(12042197-12042298)
chr5 (29-190)||(23679411-23679573)
chr5 (29-190)||(23855238-23855400)
chr5 (80-181)||(19984974-19985075)
chr5 (61-182)||(31571007-31571132)
chr5 (80-139)||(40402029-40402088)
chr5 (116-182)||(12004566-12004631)
chr5 (115-181)||(17535350-17535416)
chr5 (112-173)||(11833293-11833354)
chr5 (27-131)||(37233061-37233166)
chr5 (119-167)||(28080093-28080141)
chr5 (116-181)||(30655231-30655297)
chr5 (4-129)||(42076078-42076204)
chr5 (109-181)||(15160366-15160439)
chr5 (116-163)||(11499955-11500002)
chr5 (116-163)||(11507342-11507389)
chr5 (116-163)||(11514714-11514761)
chr5 (116-163)||(11522115-11522162)
chr5 (116-163)||(11529528-11529575)
chr5 (101-179)||(14117275-14117353)
chr5 (119-181)||(38450025-38450087)
chr5 (135-181)||(42076046-42076092)
chr5 (130-183)||(4376565-4376618)
chr5 (101-178)||(16411573-16411649)
[»] chr8 (26 HSPs)
chr8 (65-183)||(31347326-31347444)
chr8 (80-181)||(6403572-6403673)
chr8 (57-182)||(6801827-6801952)
chr8 (64-181)||(29553608-29553725)
chr8 (44-161)||(25638806-25638923)
chr8 (44-161)||(28249059-28249176)
chr8 (44-158)||(45356096-45356210)
chr8 (61-178)||(5000661-5000778)
chr8 (62-163)||(17634473-17634574)
chr8 (57-163)||(5528740-5528846)
chr8 (80-181)||(5650965-5651066)
chr8 (36-163)||(25637641-25637769)
chr8 (80-148)||(29345443-29345511)
chr8 (44-163)||(19448445-19448564)
chr8 (44-163)||(19532512-19532631)
chr8 (44-163)||(19369894-19370013)
chr8 (80-181)||(26173781-26173880)
chr8 (58-179)||(31369104-31369225)
chr8 (17-181)||(14997600-14997765)
chr8 (64-167)||(19371273-19371376)
chr8 (44-163)||(18766914-18767033)
chr8 (116-181)||(19341476-19341542)
chr8 (108-181)||(7292813-7292885)
chr8 (102-180)||(29386460-29386540)
chr8 (57-127)||(6223434-6223504)
chr8 (141-183)||(44719155-44719197)
[»] scaffold0576 (1 HSPs)
scaffold0576 (64-161)||(6698-6795)
[»] chr7 (22 HSPs)
chr7 (17-181)||(3234306-3234471)
chr7 (25-179)||(30089716-30089871)
chr7 (57-163)||(26224975-26225081)
chr7 (61-181)||(26608540-26608660)
chr7 (44-163)||(10022121-10022240)
chr7 (44-161)||(4685387-4685504)
chr7 (25-181)||(26619068-26619223)
chr7 (57-163)||(26205412-26205518)
chr7 (25-181)||(26621055-26621212)
chr7 (44-163)||(9242468-9242587)
chr7 (29-179)||(27135905-27136061)
chr7 (115-181)||(14803115-14803181)
chr7 (115-181)||(15250109-15250175)
chr7 (80-148)||(20277380-20277448)
chr7 (80-163)||(16170268-16170351)
chr7 (16-93)||(26701098-26701175)
chr7 (56-181)||(29932345-29932469)
chr7 (116-181)||(24731810-24731876)
chr7 (87-136)||(3374325-3374374)
chr7 (116-176)||(7711412-7711473)
chr7 (80-137)||(16086510-16086567)
chr7 (116-176)||(28312660-28312721)
[»] scaffold0007 (1 HSPs)
scaffold0007 (101-182)||(8723-8803)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-174)||(446236-446397)
[»] scaffold0684 (1 HSPs)
scaffold0684 (44-163)||(731-850)
[»] scaffold0069 (1 HSPs)
scaffold0069 (44-148)||(40682-40786)
[»] scaffold1005 (1 HSPs)
scaffold1005 (116-163)||(645-692)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 5498634 - 5498404
Alignment:
Q  4 atataaacaagtaacattttatgaatgttactaataatacataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagtt 103  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  5498634 atataaacaagtaatactttatgaatgttactaataatacataaaatattaccaaaactctttagtaacataggttttacctaacaattgttcagaagtt 5498535  T
Q  104 actaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgattgttattgacaacattataa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5498534 actaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgattgttattgacaacattataa 5498435  T
Q  204 gattttgttgatatagcaaatacattgttat 234  Q
    |||||||||||||||||||||||||||||||    
T  5498434 gattttgttgatatagcaaatacattgttat 5498404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 27713391 - 27713554
Alignment:
Q  12 aagtaacattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaat 110  Q
    |||||||| ||||| ||||||||||||||||| |||||||||| | |||||| |||||||||| |||| || |||||||||| || | | ||||||||||    
T  27713391 aagtaacactttat-aatgttactaataatactataaaatattgctaaaactatttagtaacataggttttgcctaacaattatttaaatgttactaaat 27713489  T
Q  111 ttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgta 178  Q
    ||||||||||||   ||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  27713490 ttaattagtaac---ttttttgaattagttacattttttaaatgttactaaatctcaattatgctgta 27713554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 9633398 - 9633564
Alignment:
Q  17 acattttatgaatgttactaataataca-taaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaat 115  Q
    ||||||| ||||||||||  ||||| |  |||||| | || |||||||||||||||||  ||  |||||||||||||||| | | || ||||||||||||    
T  9633398 acattttttgaatgttacatataatgctctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttaat 9633497  T
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtga 182  Q
    ||||||||||||| | |||||||| | | |||| || ||||||||||||||||||||||||||||||    
T  9633498 tagtaacatttttttcgatttagtaatagttttcaagtgttactaaatctcaattatgttgtagtga 9633564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 16457335 - 16457453
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||||||||||  |  |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||  | |||    
T  16457335 tttagtaacacgagctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgatttagttacaattttcaattgttgttgaat 16457434  T
Q  164 ctcaattatgttgtagtga 182  Q
    |||||| ||||||||||||    
T  16457435 ctcaatcatgttgtagtga 16457453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 27259474 - 27259566
Alignment:
Q  89 aattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||| | | |||| ||||||||||||||||||||||||||||||||    
T  27259474 aattgttcaaatgttactaaatttaattagtaacattttgcttgatttagtaatagttttcaattgttactaaatctcaattatgttgtagtg 27259566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 2550282 - 2550168
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||||||  ||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  2550282 ataaaatgtaactaaaacactttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 2550183  T
Q  144 ttttttaattgttac 158  Q
     |||| || ||||||    
T  2550182 attttcaagtgttac 2550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 1654692 - 1654575
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| ||||| |||||||||  |||| |||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  1654692 ataaaatgtaactaaaacactttaataacacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 1654593  T
Q  144 ttttttaattgttactaa 161  Q
     |||| ||||||||||||    
T  1654592 attttcaattgttactaa 1654575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 13846108 - 13845989
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  13846108 ataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 13846009  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||| ||||||    
T  13846008 attttcaagtgttgctaaat 13845989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 7407738 - 7407855
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||||||||||||||||||   ||| ||||||||||||||||| |||||||||||||||||||||    
T  7407738 ataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttttcttgatttagttaca 7407837  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  7407838 attttcaagtgttactaa 7407855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 1627931 - 1628050
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||| ||||||| |   |||| |||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||    
T  1627931 ataaaatgtaactaaaactcttttgtaacacggactttacttaacaattgttcaagtgttactaaatttaattagtaatatttttcttgatttagttaca 1628030  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||||||||||    
T  1628031 attttcaagtgttactaaat 1628050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 26707958 - 26707839
Alignment:
Q  61 ctctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttacta 160  Q
    ||||||||||||| ||   |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||  |||| || |||||||     
T  26707958 ctctttagtaacagagactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactc 26707859  T
Q  161 aatctcaattatgttgtagt 180  Q
     ||  ||||||||| |||||    
T  26707858 gattacaattatgtagtagt 26707839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 1613233 - 1613318
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatct 165  Q
    |||||||| ||||| |||   ||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||    
T  1613233 ttacctaaaaattggtcaactgttactaaatttatttagtaacatttttcttgatttagttacatttttcaactgttactaaatct 1613318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 2943198 - 2943297
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  | |||||||||||||||  | ||||||||||||||||||||||||||||||||||||| |||||    
T  2943198 ataaaatgtaactaaaacactttagtaacacgggcttaacctaacaattgttcgaatgttactaaatttaattagtaacatttttcttgatttaattaca 2943297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 36035423 - 36035310
Alignment:
Q  27 aatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatt 125  Q
    ||||||||  ||||||| ||||||| | || ||| ||||||||||||||  |  ||||||||||||||| ||   ||||||||||||||||||||  |||    
T  36035423 aatgttacatataatactataaaatgtaactaaagctctttagtaacacgagctttacctaacaattgtacaattgttactaaatttaattagtattatt 36035324  T
Q  126 tttcttgatttagt 139  Q
    ||||||||||||||    
T  36035323 tttcttgatttagt 36035310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 36035078 - 36034996
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgat 183  Q
    ||||||||||||||||||||  |||||||||||||||||  || |||| || ||| | || || |||||||||||||||||||    
T  36035078 gttactaaatttaattagtattatttttcttgatttagtaccaattttgaagtgtcattagatgtcaattatgttgtagtgat 36034996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 36035529 - 36035449
Alignment:
Q  103 tactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgat 183  Q
    |||||||||| || ||||  |||||||||||| |||| ||| |||| || |||||||| || |||||||||||||||||||    
T  36035529 tactaaatttgatcagtattatttttcttgatatagtaacaattttgaagtgttactagatgtcaattatgttgtagtgat 36035449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 24993440 - 24993326
Alignment:
Q  69 taacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacattt-ttcttgatttagttacattttttaattgttactaaatctca 167  Q
    |||||||||| |||||||||| || |||| | ||||| | || ||| ||||||| ||| || || ||||||||||| |||| || |||||||||||||||    
T  24993440 taacacaggttttacctaacattt-ttcaaatgttacaagatctaaatagtaacgtttgttttttatttagttacaattttgaagtgttactaaatctca 24993342  T
Q  168 attatgttgtagtgat 183  Q
      ||||||||||||||    
T  24993341 tatatgttgtagtgat 24993326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 35083052 - 35083000
Alignment:
Q  84 ctaacaattgttcagaagttactaaatttaattagtaacatttttcttgattt 136  Q
    |||||||||||||| |  |||||||||||| ||| ||||||||||||||||||    
T  35083052 ctaacaattgttcaaatattactaaatttatttactaacatttttcttgattt 35083000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 26735768 - 26735681
Alignment:
Q  27 aatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaattta 113  Q
    ||||||||||||||||| || |||| |||   || |||||||||||||  | | |||||||||||||||||| | |||||||||||||    
T  26735768 aatgttactaataatactatgaaatgttattgaagctctttagtaacatggattttacctaacaattgttcaaatgttactaaattta 26735681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 24558938 - 24559117
Alignment:
Q  4 atataaacaagtaacattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagt 102  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||| || |||| |||||||||||||||   |||||||||||| ||||| | ||    
T  24558938 atataaacaagtaacaatttatgaatgttactgataatactataaaatatcactaaaattctttagtaacacagccgttacctaacaatcgttcaaatgt 24559037  T
Q  103 tactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24559038 tactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttctagtga 24559117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 47066018 - 47066137
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||| ||||||| ||  |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  47066018 ataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttaca 47066117  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||||||||||    
T  47066118 attttcaagtgttactaaat 47066137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 4881072 - 4881199
Alignment:
Q  63 ctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaa 162  Q
    |||||||||||| |   ||||||||||||| | || |  |||||||||||||| ||||||||||||||||||||||| ||| |||| || |||||||  |    
T  4881072 ctttagtaacacggactttacctaacaattatacaaatattactaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactgga 4881171  T
Q  163 tctcaattatgttgtagtgattgttatt 190  Q
    | ||||||||||||||||||||||||||    
T  4881172 tgtcaattatgttgtagtgattgttatt 4881199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 53300467 - 53300348
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||| ||||||| ||  |||||||||||||||| ||  ||||||||||||||||| ||||||||||||||||||| |||||    
T  53300467 ataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattactaacatttttcttgatttaattaca 53300368  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||||||||||    
T  53300367 attttcaagtgttactaaat 53300348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 4904160 - 4904270
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||||||| || | ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||| |||||||  || | ||||||| || ||    
T  4904160 ttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttcatgatttagtaacaatttttaagtgttactggatgttaattatgctgcag 4904259  T
Q  180 tgattgttatt 190  Q
    |||||||||||    
T  4904260 tgattgttatt 4904270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 43600383 - 43600269
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||||||||||||||||||    || |||||||||||||||||||||||||||||||||||||||    
T  43600383 ataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacatttttcttgatttagttaca 43600284  T
Q  144 ttttttaattgttac 158  Q
     |||| || ||||||    
T  43600283 attttcaagtgttac 43600269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 1684949 - 1685055
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    |||||||||||||||||| |   ||| |||||||||||||    ||| | ||||||||||||||||||||||||||||||||||||| |||| || ||||    
T  1684949 aaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgtt 1685048  T
Q  157 actaaat 163  Q
     ||||||    
T  1685049 gctaaat 1685055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 4923690 - 4923763
Alignment:
Q  117 agtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgattgttatt 190  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||  || | ||||||||||||||||||||||||    
T  4923690 agtaacatttttcttgatttagtaacaatttttaagtgttactggatgttaattatgttgtagtgattgttatt 4923763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 48464118 - 48464047
Alignment:
Q  82 acctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaatt 153  Q
    |||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||| |||| ||||    
T  48464118 acctaacaattgttcaaatgttactaaatttaattagtaacatttttatttatttagtaacaattttcaatt 48464047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 21539273 - 21539354
Alignment:
Q  61 ctctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||||||||| |||  ||| |||||||||||| | | ||||||||||||||| ||||||||||| |||||||||||||||    
T  21539273 ctctttagtaaca-aggacttatctaacaattgtttaaatgttactaaatttaatcagtaacattttccttgatttagttaca 21539354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 45641804 - 45641640
Alignment:
Q  7 taaacaagtaacattttatgaatgttactaataatacataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttact 106  Q
    |||| |||||||| ||| | ||||||||||||||| |  ||||| |||| ||||||||| | |||||||    ||  ||| ||||||| || | ||||||    
T  45641804 taaataagtaacaatttttaaatgttactaataatgctaaaaatgttactaaaactcttaaataacacacaccttcactagcaattgtgcaaatgttact 45641705  T
Q  107 aaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatg 173  Q
    | || |||||||||||||||||| ||||   ||  |||||||||| |||||||| ||||||||||||    
T  45641704 agatataattagtaacatttttcatgatg--gtaccattttttaaatgttactagatctcaattatg 45641640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 1152147 - 1152041
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    |||||||||||||||||| |   ||| ||||||||||||     ||| | ||||||||||||||||||||||||| ||||||||||| |||| || ||||    
T  1152147 aaaactctttagtaacacggactttatctaacaattgtttgagtgttgcaaaatttaattagtaacatttttcttaatttagttacaattttcaagtgtt 1152048  T
Q  157 actaaat 163  Q
     ||||||    
T  1152047 gctaaat 1152041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 26075291 - 26075368
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgta 178  Q
    ||||||||||||| ||||||||  |||||||||| |||| ||| |||| |||||||| || || ||||||||||||||    
T  26075291 gttactaaatttacttagtaaccattttcttgatctagtaacaattttcaattgttattagatttcaattatgttgta 26075368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 37751014 - 37751114
Alignment:
Q  84 ctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgat 183  Q
    ||||||||||  || | |||||| | ||||||||||||||||||| |||||||||| ||| |||| |  |||||||  || |||||||||||||||||||    
T  37751014 ctaacaattgcgcaaatgttactgattttaattagtaacattttt-ttgatttagtgacaattttcatatgttactggatgtcaattatgttgtagtgat 37751112  T
Q  184 tg 185  Q
    ||    
T  37751113 tg 37751114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 2549356 - 2549239
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacattt-ttcttgatttagttacattttttaattgttactaaa 162  Q
    ||||||||||| ||| |||||||||| |||| || |  |||| | |||||| ||||||||||| || |||||||| ||||| |||  || ||||||||||    
T  2549356 tttagtaacacgggttttacctaacatttgt-caaatattacaagatttaaatagtaacatttgtttttgatttaattacaatttagaagtgttactaaa 2549258  T
Q  163 tctcaattatgttgtagtg 181  Q
    |||||  ||||||||||||    
T  2549257 tctcatatatgttgtagtg 2549239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 26075222 - 26075300
Alignment:
Q  85 taacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||||||||||  | ||||| ||||||| ||||||||| |||||||||| || | ||| ||||| |||||||||||||    
T  26075222 taacaattgttcgaatgttacaaaatttacttagtaacaattttcttgatctaataacaattttttattgttactaaat 26075300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 12190109 - 12189931
Alignment:
Q  4 atataaacaagtaacattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagt 102  Q
    |||||||| ||||||| |||||  |||||||||||||||| |||||| ||||| |||||||||||||||||| ||  |||||||||||||||||| | ||    
T  12190109 atataaacgagtaacactttatatatgttactaataatactataaaaaattactaaaactctttagtaacacgggctttacctaacaattgttcaaatgt 12190010  T
Q  103 tactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  12190009 tactaaatttaattagtaatatttttcttgatttagttacattttttaattgtttctaattctcaattatgttgtagtg 12189931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 28636983 - 28636882
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||||    
T  28636983 ttacctaacaattattcaaatgttactaaattgaattagtaacatttttcttgatttagttacaatttttaaatgttactagatcttaattatgttgtag 28636884  T
Q  180 tg 181  Q
    ||    
T  28636883 tg 28636882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 16222882 - 16222775
Alignment:
Q  56 caaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgt 155  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||   |||||||||||| |||||||||||||||||||||||||||||| |||| || |||    
T  16222882 caaaactctttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttcttgatttagttacaattttcaaatgt 16222783  T
Q  156 tactaaat 163  Q
    ||||||||    
T  16222782 tactaaat 16222775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 897535 - 897433
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||||||||||   |||||||||||||||||| |||||||||||| ||||||| ||| |||| || ||| |||| |||| |||||||||||||    
T  897535 ttacctaacaattgttcaattgttactaaatttaattaggaacatttttcttcatttagtaacaattttcaactgtaactatatcttaattatgttgtag 897436  T
Q  180 tga 182  Q
    |||    
T  897435 tga 897433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 5911684 - 5911786
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||| | |||| || |||||||| |||  ||| |||||||||    
T  5911684 ttacctaacaattgttcaagtgttactaaatttaatcagtaacatttttcttgatttagttaaaattttcaagtgttactatatcataatcatgttgtag 5911783  T
Q  180 tga 182  Q
    |||    
T  5911784 tga 5911786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 3399718 - 3399642
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagtt 140  Q
    |||||||||| || | |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  3399718 tttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcatgatttagtt 3399642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 20427737 - 20427856
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacattt-ttcttgatttagttacattttttaattgttactaaa 162  Q
    ||||||||||| ||| |||||||||| |||| || ||||||| | || ||| ||||||||||| || |||||||||||||| |||| |||||||||||||    
T  20427737 tttagtaacacgggttttacctaacatttgt-caaaagttacaagatctaaatagtaacatttgtttttgatttagttacaattttgaattgttactaaa 20427835  T
Q  163 tctcaattatgttgtagtgat 183  Q
    |||||  | ||||||||||||    
T  20427836 tctcatatgtgttgtagtgat 20427856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 13208715 - 13208624
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttt 148  Q
    ||||| |||||||||||| ||| |||||||||||| |||||   | ||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  13208715 aaaacactttagtaacacgggttttacctaacaatggttcaagtggtactaaatttaattagtaacatttttcttaatttaattacaatttt 13208624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 15214407 - 15214324
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||| |||||||||||| |  |||||||||||||||||||| |||||||||||||||||| || |||| || |||||||||||    
T  15214407 ttacccaacaattgttcaaatattactaaatttaattagtaaaatttttcttgatttagttgcaattttcaagtgttactaaat 15214324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 51758869 - 51758750
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||||||||||||| ||  |  |||||||| ||||||||    ||| ||||||||||||| |||||||||||||||||||||||||    
T  51758869 ataaaatgtaactaaaactctttagtaatacgagctttacctaataattgttcgagtgttgctaaatttaattactaacatttttcttgatttagttaca 51758770  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||||||||||    
T  51758769 attttcaaatgttactaaat 51758750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 17113001 - 17112904
Alignment:
Q  84 ctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||||||   ||||| |||||||| |||||  ||||||||||||||||| ||| |||| |||| |||||| || |||||||||||||||||    
T  17113001 ctaacaattgttcaagtgttacaaaatttaactagtactatttttcttgatttagtaacaattttcaattattactagatttcaattatgttgtagtg 17112904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 18308284 - 18308127
Alignment:
Q  25 tgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaaca 123  Q
    |||||||||| || ||||| ||||||| | || ||| | ||| |||||||||||  |||||||||||||||  | | |||| ||| | ||||  ||||||    
T  18308284 tgaatgttacaaacaatactataaaatgtaactaaagcccttcagtaacacaggctttacctaacaattgtagaaatgttaataattgtaatctgtaaca 18308185  T
Q  124 tttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||||||||||||||| ||| |||| || |||||||| || ||||||||||| |||||    
T  18308184 tttttcttgatttagtaacaattttcaaatgttactagatgtcaattatgttttagtg 18308127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 37097371 - 37097443
Alignment:
Q  91 ttgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||||| | |||||||||||| || ||||||||||||||||||||||||||| |||| || |||||||||||    
T  37097371 ttgttcaaatgttactaaattttatcagtaacatttttcttgatttagttacaattttcaagtgttactaaat 37097443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 39368663 - 39368761
Alignment:
Q  83 cctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||||  | | || ||||| |||||||||||||||||||||||||||||| |||||||| |   ||||||| || |||||||||||| ||||    
T  39368663 cctaacaattgtataaatgtgactaattttaattagtaacatttttcttgatttagtaacatttttcatgggttactagatgtcaattatgttgcagtg 39368761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 15204674 - 15204613
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagtta 141  Q
    ||||||||||||||||||   ||||||||||||| |||| ||||||||||||||||||||||    
T  15204674 ttacctaacaattgttcaagtgttactaaatttagttagcaacatttttcttgatttagtta 15204613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 1844032 - 1843981
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttctt 131  Q
    |||||||||||||||||| | ||||||||||| ||| |||||||||||||||    
T  1844032 ttacctaacaattgttcaaatgttactaaattcaatcagtaacatttttctt 1843981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 15193978 - 15193916
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||| ||||||||||||||||||||||||||||||| ||| |  |||| || |||||||||||    
T  15193978 gttaataaatttaattagtaacatttttcttgatttcgttgctattttcaagtgttactaaat 15193916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 34374987 - 34374816
Alignment:
Q  1 aatatataaacaagtaacattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaatt--gttca 97  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||  ||||||||||||||||||| | || ||||||||||  |||||    
T  34374987 aatatataaacaagtaacactttatgaatgttactcataatactataaaatattactcaaactctttagtaacacagattttgcctaacaattttgttca 34374888  T
Q  98 gaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaat 169  Q
     | ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  34374887 aatgttacaaaatataattagtaacatttttcttgatttaattacattttttaattgttacttaatctcaat 34374816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 29667899 - 29668038
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttc--ttgatttagtta 141  Q
    ||||||| |||| ||| ||||||| ||||||| |  |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| ||||    
T  29667899 ataaaatgttactaaatctctttaataacacaagctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttttgatttcgtta 29667998  T
Q  142 cattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    || |||| ||||||||| | ||||||||||||||||||||    
T  29667999 caattttcaattgttacaagatctcaattatgttgtagtg 29668038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 16734921 - 16734804
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  |||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  16734921 ataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttttcttgatttagttaca 16734822  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  16734821 attttcaagtgttactaa 16734804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 23264497 - 23264619
Alignment:
Q  61 ctctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacatttttta--attgttac 158  Q
    |||||||||||||| | | |||||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||| ||| |||| |  ||| ||||    
T  23264497 ctctttagtaacacggattttacctaacaattgttcgaatgttactaaatttaattagtaacaattttcttgatttagtaacaattttcaatattcttac 23264596  T
Q  159 taaatctcaattatgttgtagtg 181  Q
    || ||||||||||||||||||||    
T  23264597 tagatctcaattatgttgtagtg 23264619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 12591936 - 12591830
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    |||||||||||||||||| ||  |||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||    
T  12591936 aaaactctttagtaacacgggctttacctaacaattgttcgagcgttactaaatttaattactaacatttttcttgatttagttacaattttcaagtgtt 12591837  T
Q  157 actaaat 163  Q
    |||||||    
T  12591836 actaaat 12591830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 15361811 - 15361714
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaa 161  Q
    ||||||||||| ||  ||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  15361811 tttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaa 15361714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 4485520 - 4485688
Alignment:
Q  16 aacattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaa 114  Q
    |||||||| | ||||||||||||||| | ||| | | |||| |||||| |||| |||||| |   ||||||||||||| |||| |  |||||||||||||    
T  4485520 aacatttttttaatgttactaataattctatagattgttactaaaactatttaataacacggactttacctaacaattattcaaatattactaaatttaa 4485619  T
Q  115 ttagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgat 183  Q
    |||||| |||||| |||||||||||| ||||||| || || ||||| |||| |||||||||||||||||    
T  4485620 ttagtaccattttccttgatttagttgcatttttcaactgatactagatcttaattatgttgtagtgat 4485688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 11936751 - 11936868
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||| ||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  11936751 ataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 11936850  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  11936851 attttcaagtgttactaa 11936868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 9631178 - 9631273
Alignment:
Q  83 cctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgta 178  Q
    ||||||||||||||| | ||||||||||||| |||||||| || ||||||||||||| | | |||| || ||||||||||||||||||||||||||    
T  9631178 cctaacaattgttcaaatgttactaaatttacttagtaacgttcttcttgatttagtaatagttttcaagtgttactaaatctcaattatgttgta 9631273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 6673660 - 6673737
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||    
T  6673660 gttactaaatttt-ttagtaacatttttcttgatttagttacatttttcaactgttactaaatcttaattatgttgtag 6673737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 11948731 - 11948835
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||| ||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  11948731 ataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 11948830  T
Q  144 ttttt 148  Q
     ||||    
T  11948831 atttt 11948835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 6684209 - 6684091
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||||||||||  |   |||||||||||| ||||    ||||||||||||||||||||||||||||||||||| |||||||    
T  6684209 ataaaatgtaactaaaactctttagtaacatggactttacctaacaat-gttcgagtgttactaaatttaattagtaacatttttcttgattaagttaca 6684111  T
Q  144 ttttttaattgttactaaat 163  Q
     ||||||| |||||||||||    
T  6684110 atttttaagtgttactaaat 6684091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 14669314 - 14669449
Alignment:
Q  29 tgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttt 127  Q
    |||||| |||||||| ||||||| | || |||||||||||||||||| |   ||||||||||||| |||    ||| | |||||||||||||||||||||    
T  14669314 tgttacaaataatactataaaatgtaactaaaactctttagtaacacggactttacctaacaattattcgagtgttgcaaaatttaattagtaacatttt 14669413  T
Q  128 tcttgatttagttacattttttaattgttactaaat 163  Q
    |||||||||||||||| |||| || |||| ||||||    
T  14669414 tcttgatttagttacaattttcaagtgttgctaaat 14669449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 1942665 - 1942548
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||| ||||| |||| ||||||| |||||| ||| | |||| ||||||| || ||||| ||||||||||||||||||||| || | || |||||| ||||    
T  1942665 tttaataacaaaggttttacctagcaattgctcaaatgttattaaattttatcagtaatatttttcttgatttagttacaattatcaaatgttaccaaat 1942566  T
Q  164 ctcaattatgttgtagtg 181  Q
    || |||||||||||||||    
T  1942565 cttaattatgttgtagtg 1942548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 23904372 - 23904469
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgt 177  Q
    |||||||||||||||||| | ||||||||||| | |||||||| |||||||| |||||||  || |||| || |||||||| ||||||||||||||||    
T  23904372 ttacctaacaattgttcaaatgttactaaattgatttagtaacttttttcttcatttagtagcaattttcaagtgttactagatctcaattatgttgt 23904469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 15690494 - 15690435
Alignment:
Q  104 actaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  15690494 actaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttactaaat 15690435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 17719720 - 17719826
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    |||||||||||||||||| |   ||| |||||||||||||    ||| | ||| ||||||||||||||||||||||||||||||||| |||| || ||||    
T  17719720 aaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttttcttgatttagttacaattttcaagtgtt 17719819  T
Q  157 actaaat 163  Q
     ||||||    
T  17719820 gctaaat 17719826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 10935801 - 10935901
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacatttttt-aattgttactaaatctcaattatgttgta 178  Q
    |||||||||||||||||| | ||||||  || |||||||||||||||||| ||||||||| | ||||||| ||  |||| || ||||||||| |||||||    
T  10935801 ttacctaacaattgttcaaatgttactggatataattagtaacatttttcatgatttagtaatattttttcaaacgttattagatctcaattttgttgta 10935900  T
Q  179 g 179  Q
    |    
T  10935901 g 10935901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 6346862 - 6346979
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacattt-ttcttgatttagttacattttttaattgttactaaa 162  Q
    |||||||||| |||  |||||||||| || | || | ||||| |||||||| ||||||||||| || |||||||||||||| |||| |  ||||||||||    
T  6346862 tttagtaacataggctttacctaacatttat-caaatgttacaaaatttaaatagtaacatttatttttgatttagttacaattttaatgtgttactaaa 6346960  T
Q  163 tctcaattatgttgtagtg 181  Q
    |||||  ||||||| ||||    
T  6346961 tctcatatatgttgcagtg 6346979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 7913458 - 7913528
Alignment:
Q  117 agtaacattt-ttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgattgt 186  Q
    |||||||||| || |||||||||||||| |||| || |||||||||||||||   ||||||||||||||||    
T  7913458 agtaacatttgtttttgatttagttacaattttgaagtgttactaaatctcatacatgttgtagtgattgt 7913528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 2941086 - 2941002
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacat-ttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||||||||| ||| ||| | |||||||||  ||||||||||||| |||| ||||||| |||||| ||||||| |||| ||||||    
T  2941086 ttacctaacatttgctcaaatgttactaaacataattagtaacatctttttttgattttgttacaatttttaaatgttcctaaat 2941002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 9236126 - 9236011
Alignment:
Q  64 tttagtaacacaggtatt-acctaacaattgttcagaagttactaaatttaattagtaacattt-ttcttgatttagttacattttttaattgttactaa 161  Q
    ||||||||||| ||| || |||||||| |||| || | ||||| |||||||| |||||| |||| || |||||||||||||  |||| || |||||||||    
T  9236126 tttagtaacacgggtttttacctaacatttgt-caaatgttacaaaatttaaatagtaatatttgtttttgatttagttacgattttgaagtgttactaa 9236028  T
Q  162 atctcaattatgttgta 178  Q
    ||||||  |||||||||    
T  9236027 atctcatatatgttgta 9236011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 4591229 - 4591138
Alignment:
Q  81 tacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattat 172  Q
    |||||||||||||| || | |||| | | ||||||  |||||||||||||||||||||| | | |||| || ||||||||||| | ||||||    
T  4591229 tacctaacaattgtacaaaggttattgattttaatcggtaacatttttcttgatttagtaataattttcaaatgttactaaatgttaattat 4591138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 30481269 - 30481307
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagt 139  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  30481269 gttactagatttaattagcaacatttttcttgatttagt 30481307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 10070714 - 10070674
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagtta 141  Q
    |||| |||||||||||||||||| |||| ||||||||||||    
T  10070714 gttattaaatttaattagtaacaattttgttgatttagtta 10070674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 30129741 - 30129769
Alignment:
Q  150 aattgttactaaatctcaattatgttgta 178  Q
    |||||||||||||||||||||||||||||    
T  30129741 aattgttactaaatctcaattatgttgta 30129769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 41573538 - 41573370
Alignment:
Q  16 aacattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaa 114  Q
    |||||||| | ||||||||||||||||| ||||||| |||   ||    ||||||||||| ||  |||||||||||||||| |   ||||||||||||||    
T  41573538 aacattttctaaatgttactaataatactataaaatgttattgaagtaatttagtaacacggggtttacctaacaattgtttaactgttactaaatttaa 41573439  T
Q  115 ttagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgat 183  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  41573438 ttagtaacatttttcttgatttagttacattttttgaatgttactaaatctcaattttgttgtagtgat 41573370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 30267119 - 30267000
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||| ||||||| ||  |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  30267119 ataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttaca 30267020  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||||||||||    
T  30267019 attttcaagtgttactaaat 30267000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 24479268 - 24479131
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||||| || ||| ||||||||||||||  |  |||||||| ||||||||| | ||||||||||||||||||||||| || |||||||||||| | |    
T  24479268 ataaaatataactaaagctctttagtaacacgagctttacctaagaattgttcaaatgttactaaatttaattagtaacagttatcttgatttagtaata 24479169  T
Q  144 ttttttaattgttactaaatctcaattatgttgtagtg 181  Q
     |||| || |||||||| |||||||||||||| |||||    
T  24479168 attttcaagtgttactatatctcaattatgttatagtg 24479131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 44921073 - 44920955
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||||||||||||||||  |  |||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||||||    
T  44921073 ataaaatgtaactaaaactctttagtaacacgagctttacctaacaattgtttaggtgttactaaatttaattagtaacattttt-ttgatttagttaca 44920975  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||||||||||    
T  44920974 attttcaagtgttactaaat 44920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 11017591 - 11017441
Alignment:
Q  27 aatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatt 125  Q
    ||||||||| ||||||| ||||| | ||||  || || ||||||||||| |   |||||||||||||| ||| | ||||||||||||||||||||||| |    
T  11017591 aatgttactgataatactataaagtgttactgaagctttttagtaacacggactttacctaacaattggtcaaatgttactaaatttaattagtaacaat 11017492  T
Q  126 tttcttgatttagttacattttttaattgttactaaatctcaattatgttg 176  Q
    |||||| ||||||| ||  |||| ||||||||||| |||||||||||||||    
T  11017491 tttctttatttagtaacggttttcaattgttactagatctcaattatgttg 11017441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 31342700 - 31342817
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||| ||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  31342700 ataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 31342799  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  31342800 attttcaagtgttactaa 31342817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 15513763 - 15513664
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||||||||||  |  ||||||||||||||||||   ||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  15513763 tttagtaacacgagctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttcttgatttacttacaatttttaattgttactaaat 15513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 7718288 - 7718182
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    |||||||||||||||||| |   ||| ||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||| |||| || | ||    
T  7718288 aaaactctttagtaacacggactttatctaacaattgttcatgtgttactaaatttaattagtaatatttttcttgatttagttacaattttcaagtatt 7718189  T
Q  157 actaaat 163  Q
    |||||||    
T  7718188 actaaat 7718182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 7702509 - 7702409
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||||||| || | |||||||| |||||||| |||||||||| || ||||||| | | |||| |  |||||||| || |||||||||||||||    
T  7702509 ttacctaacaattgtacaaatgttactaattttaattaataacattttttttaatttagtaataattttcatgtgttactagatgtcaattatgttgtag 7702410  T
Q  180 t 180  Q
    |    
T  7702409 t 7702409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 22966623 - 22966502
Alignment:
Q  62 tctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacattt--ttcttgatttagttacattttttaattgttact 159  Q
    ||||||||||||  ||  |||||||||||||||| | | || ||||||||| |||||||| ||||  || || ||||||| | | |||| || |||||||    
T  22966623 tctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttcattagtaatattttattttttatttagtaatagttttcaagtgttact 22966524  T
Q  160 aaatctcaattatgttgtagtg 181  Q
    ||||||||||||| ||||||||    
T  22966523 aaatctcaattatattgtagtg 22966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 40016671 - 40016614
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgattta 137  Q
    ||||||||||||| |||| | ||||||||||||||| ||||||||||| |||||||||    
T  40016671 ttacctaacaattattcaaatgttactaaatttaatcagtaacattttacttgattta 40016614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 15540244 - 15540421
Alignment:
Q  7 taaacaagtaacattttatgaatgttactaataatac--ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagtta 104  Q
    ||||||||||||||||| | | |||||||||||||||  | ||||| ||||  | ||  ||||||| ||||    ||||||| |||||||| | | ||||    
T  15540244 taaacaagtaacattttttaattgttactaataatactaaaaaaatgttactgataccgtttagtaccacaaactttacctatcaattgttaa-atgtta 15540342  T
Q  105 ctaaatttaattagtaacatttttct-tgatttagttacattttttaattgttactaaatctcaattatgttgtagtga 182  Q
    ||| || ||||||||||||| ||| | ||||||||| | | |||| || |||||||||| ||||||||||| |||||||    
T  15540343 ctagatataattagtaacatatttttgtgatttagtaatacttttcaaatgttactaaagctcaattatgtcgtagtga 15540421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 7724946 - 7724869
Alignment:
Q  102 ttactaaatttaattagtaacatttttcttg-atttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||||| ||||||||||||||||| ||||| | |||   ||||| |||||||||||||||  ||| ||||||||    
T  7724946 ttactaaatttaaatagtaacatttttcttgtatttactaaca---tttaaatgttactaaatctcatatatattgtagtg 7724869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 24846949 - 24847015
Alignment:
Q  116 tagtaacattt-ttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||| || |||||||||||||| |||| || |||||| ||||||||  ||||||||||||    
T  24846949 tagtaacatttgtttttgatttagttacaattttgaaatgttacaaaatctcatgtatgttgtagtg 24847015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 179
Target Start/End: Complemental strand, 26734828 - 26734732
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||||| |||| |  || ||||||||||||| |||  ||||||||||||||   ||| |||| || ||||| || |||||||||||| |||||    
T  26734828 ttacctaacaattattcaaatattgctaaatttaattaataagttttttcttgattta---acaattttcaaatgttattatatctcaattatgctgtag 26734732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 27151276 - 27151343
Alignment:
Q  104 actaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattat 172  Q
    ||||| |||||||||| ||||||||||||||||||| |||  ||| |||| |||||| || ||||||||    
T  27151276 actaattttaattagtgacatttttcttgatttagtaaca-atttaaattattactagatgtcaattat 27151343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 32265965 - 32265917
Alignment:
Q  133 atttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||| |||| || |||||||||||||||  ||||||||||||    
T  32265965 atttagttacaattttgaactgttactaaatctcatatatgttgtagtg 32265917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 9333581 - 9333682
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||| |||||||||    
T  9333581 ttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgattttgttacaattttcaattgttacaaaatctcaatcatgttgtag 9333680  T
Q  180 tg 181  Q
    ||    
T  9333681 tg 9333682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 9354409 - 9354510
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    |||||||||||||| ||| | |||| |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||    
T  9354409 ttacctaacaattgctcaaatgttattaaatttaattagtaacatttttcttgattcagttacaattttcaattgttactaaatctcaatcatgttgtag 9354508  T
Q  180 tg 181  Q
    ||    
T  9354509 tg 9354510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 17037659 - 17037540
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||||||||||| |   |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  17037659 ataaaatgtaactaaaactctttagtaacactgactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagttacg 17037560  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||||||||||    
T  17037559 attttcaagtgttactaaat 17037540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 18191890 - 18191970
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  18191890 gttactaaatttaattagtaacatttttcttaatttagttacaattttcaattgttactaaatctcaattattttgtagtg 18191970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 31068983 - 31069065
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  31068983 ttacctaacaattgttca-atgttactaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaaat 31069065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 5079048 - 5079165
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  5079048 ataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 5079147  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  5079148 attttcaagtgttactaa 5079165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 10869516 - 10869416
Alignment:
Q  81 tacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagt 180  Q
    ||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||| |||| |||||||||||  ||| |||||||||||||||||||    
T  10869516 tacctaacaattgttcaaatgttactaaatttaattagtaacaattttcatgatttag-tacaatttttaattgtatctagatctcaattatgttgtagt 10869418  T
Q  181 ga 182  Q
    ||    
T  10869417 ga 10869416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 30786399 - 30786246
Alignment:
Q  29 tgttactaataata-cataaaatattaccaaaactctttagtaacacaggtatt-acctaacaattgttcagaagttactaaatttaattagtaacattt 126  Q
    |||||| ||||||| |||||||| | || ||| || |||||||||| ||| ||| ||||||||||| |||| | ||||||||||| ||| ||||||||||    
T  30786399 tgttacaaataataacataaaatgtgactaaatctttttagtaaca-aggcatttacctaacaattattcaaatgttactaaattgaatcagtaacattt 30786301  T
Q  127 ttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||| ||||||| |||| || |||||||| |||| |||||||||||||||    
T  30786300 ttcttgattaagttacaattttcaagtgttactagatcttaattatgttgtagtg 30786246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 7410940 - 7410823
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||||||||||||||||||   ||| |||||||||||||||||||||||| ||||||||||||||    
T  7410940 ataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttttttgatttagttaca 7410841  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  7410840 attttgaaatgttactaa 7410823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 12042197 - 12042298
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    |||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||| |||| || | |||||  |||| |||||||||||||    
T  12042197 ttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttcttgatttagttacaattttcaaatattactggatcttaattatgttgtag 12042296  T
Q  180 tg 181  Q
    ||    
T  12042297 tg 12042298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 23679573 - 23679411
Alignment:
Q  29 tgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttt 127  Q
    |||||| |||||||| ||||||| | || ||||||||||||||||||     ||| |||| ||||||||  | ||| | ||||||||||| |||||||||    
T  23679573 tgttacaaataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaataacatttt 23679474  T
Q  128 tcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgattgttatt 190  Q
    |||||||||||||||| |||| || |||| |||||| ||| |  ||| |||||| ||||||||    
T  23679473 tcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagtagtgtttgttatt 23679411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 23855238 - 23855400
Alignment:
Q  29 tgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttt 127  Q
    |||||| |||||||| ||||||| | || ||||||||||||||||||     ||| |||| ||||||||  | ||| | ||||||||||| |||||||||    
T  23855238 tgttacaaataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaataacatttt 23855337  T
Q  128 tcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgattgttatt 190  Q
    |||||||||||||||| |||| || |||| |||||| ||| |  ||| |||||| ||||||||    
T  23855338 tcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagtagtgtttgttatt 23855400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 19985075 - 19984974
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||||| |||| | |||||||||| |||||||||||||||| ||||||||||||||  ||||  | ||||||||  ||  |||||||||||||    
T  19985075 ttacctaacaattattcaaatgttactaaatctaattagtaacattttccttgatttagttaccattttcgagtgttactagttcataattatgttgtag 19984976  T
Q  180 tg 181  Q
    ||    
T  19984975 tg 19984974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 31571132 - 31571007
Alignment:
Q  61 ctctttagtaacacaggtattacctaacaattgttcagaa----gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    |||||||||||||  ||| ||||||||||||||| || |     |||||||| |||||| |||||||||||||||| |||| | ||| |||| || ||||    
T  31571132 ctctttagtaacatgggttttacctaacaattgtacatatatatgttactaattttaatcagtaacatttttcttgttttaataacaattttcaagtgtt 31571033  T
Q  157 actaaatctcaattatgttgtagtga 182  Q
    |||| || ||||||||||||||||||    
T  31571032 actagatgtcaattatgttgtagtga 31571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 40402029 - 40402088
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagt 139  Q
    |||||||||||||||||| | || |||||||||||||||||||||||||||| |||||||    
T  40402029 ttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttctttatttagt 40402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 12004566 - 12004631
Alignment:
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtga 182  Q
    |||||||||||||||||||||||||| | |||  |||||||||||||| ||||||||||||||||||    
T  12004566 tagtaacatttttcttgatttagttagaatttc-aattgttactaaatttcaattatgttgtagtga 12004631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 17535416 - 17535350
Alignment:
Q  115 ttagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||| ||||||||||||||||||||||||||||| ||  ||||||| ||||||||| ||||||||||    
T  17535416 ttagcaacatttttcttgatttagttacatttttcaaccgttactagatctcaattttgttgtagtg 17535350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 11833293 - 11833354
Alignment:
Q  112 taattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatg 173  Q
    |||||| ||||||||||| |||||||||||||||| | || |||||||||||||||||||||    
T  11833293 taattaataacatttttcatgatttagttacatttgtcaaatgttactaaatctcaattatg 11833354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 37233166 - 37233061
Alignment:
Q  27 aatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatt 125  Q
    ||||||||| ||||||| ||||||| ||||  ||||| ||||||||||| |    ||||||||||||| ||| | |||||||||||||||||||||| ||    
T  37233166 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttt 37233067  T
Q  126 tttctt 131  Q
    ||||||    
T  37233066 tttctt 37233061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 28080141 - 28080093
Alignment:
Q  119 taacatttttcttgatttagttacattttttaattgttactaaatctca 167  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  28080141 taacatttttcttgatttaattacattttttaaatgttactaaatctca 28080093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 30655231 - 30655297
Alignment:
Q  116 tagtaacattt-ttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||| || |||||||||||||| |||| || |||||||||||||||  ||||||||||||    
T  30655231 tagtaacatttgtttttgatttagttacaattttgaagtgttactaaatctcatatatgttgtagtg 30655297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 42076204 - 42076078
Alignment:
Q  4 atataaacaagtaacattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagt 102  Q
    ||||||| | |||||| ||| | ||||||||  ||||||| |||||||||| |  || || ||||||||||  |   ||| |||||||||||||| | ||    
T  42076204 atataaatatgtaacaatttttaaatgttaccgataatactataaaatattcctgaagctttttagtaacatggactttatctaacaattgttcaaatgt 42076105  T
Q  103 tactaaatttaattagtaacatttttc 129  Q
    ||||||||||||||||||||| |||||    
T  42076104 tactaaatttaattagtaacaattttc 42076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 15160439 - 15160366
Alignment:
Q  109 atttaattagtaacattt-ttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||||| ||||||||||| || |||||||| ||||| |||| || |||||||||||||||  ||||||||||||    
T  15160439 atttaaatagtaacatttgtttttgatttatttacaattttgaagtgttactaaatctcatatatgttgtagtg 15160366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 11500002 - 11499955
Alignment:
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||||||||||| || ||||||||||| ||||||| |||||||||||    
T  11500002 tagtaacatttttttttatttagttacaatttttaagtgttactaaat 11499955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 11507389 - 11507342
Alignment:
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||||||||||| || ||||||||||| ||||||| |||||||||||    
T  11507389 tagtaacatttttttttatttagttacaatttttaagtgttactaaat 11507342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 11514761 - 11514714
Alignment:
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||||||||||| || ||||||||||| ||||||| |||||||||||    
T  11514761 tagtaacatttttttttatttagttacaatttttaagtgttactaaat 11514714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 11522162 - 11522115
Alignment:
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||||||||||| || ||||||||||| ||||||| |||||||||||    
T  11522162 tagtaacatttttttttatttagttacaatttttaagtgttactaaat 11522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 11529575 - 11529528
Alignment:
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||||||||||| || ||||||||||| ||||||| |||||||||||    
T  11529575 tagtaacatttttttttatttagttacaatttttaagtgttactaaat 11529528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 14117353 - 14117275
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    ||||||||||| || ||| |||| ||||||| ||||||| |||||||  || ||||||| ||| |||| ||||||||||    
T  14117353 gttactaaattaaaatagcaacaattttcttcatttagtaacattttccaaatgttacttaatttcaaatatgttgtag 14117275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 38450025 - 38450087
Alignment:
Q  119 taacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||||||||||||||||| || ||| |||| |  |||||||| || |||||||||||||||||    
T  38450025 taacatttttcttgatttggtaacaattttcatgtgttactagatgtcaattatgttgtagtg 38450087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 42076092 - 42076046
Alignment:
Q  135 ttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||| ||| |||| ||||||||||| ||||||||||||||||||||    
T  42076092 ttagtaacaattttcaattgttactagatctcaattatgttgtagtg 42076046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 4376618 - 4376565
Alignment:
Q  130 ttgatttagttacattttttaattgttactaaatctcaattatgttgtagtgat 183  Q
    ||||||||||||||||||| || |||||| ||||||||  ||||| ||||||||    
T  4376618 ttgatttagttacatttttcaagtgttacaaaatctcatatatgtagtagtgat 4376565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 16411649 - 16411573
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgta 178  Q
    ||||||| || |||| ||||||||||||| ||||||||| | | |||| || |||||||||| |||| ||||||||||    
T  16411649 gttactagatataatcagtaacatttttcgtgatttagtaata-ttttcaaatgttactaaagctcagttatgttgta 16411573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 31347444 - 31347326
Alignment:
Q  65 ttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatc 164  Q
    |||||||||||||  ||| |||||||||| ||| | |||||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||     
T  31347444 ttagtaacacaggatttatctaacaattgatcaaatgttactaaatttaattagtagcatttttcttgatttggttacaattttcaattgttactaaatt 31347345  T
Q  165 tcaattatgttgtagtgat 183  Q
    ||||| |||||| ||||||    
T  31347344 tcaatcatgttgcagtgat 31347326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 6403673 - 6403572
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||  ||| |||||||||||||||| ||| |||||||||    
T  6403673 ttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttaatttagttacaaatttcaattgttactaaatcttaatcatgttgtag 6403574  T
Q  180 tg 181  Q
    ||    
T  6403573 tg 6403572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 6801827 - 6801952
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    |||||||||||||||||  ||  ||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||| | | |||| || ||||    
T  6801827 aaaactctttagtaacaggggctttacctaacaattgttcaactgttactaaatttaattagtaacatttttattgatttagtaatagttttcaagtgtt 6801926  T
Q  157 actaaatctcaattatgttgtagtga 182  Q
    |||||||||||  |||||||||||||    
T  6801927 actaaatctcatctatgttgtagtga 6801952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 29553725 - 29553608
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||||||||||  |  ||| |||||||||| ||| | ||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  29553725 tttagtaacacgcgctttaactaacaattgctcaaatgttgctaaatttaattagtaacatttttcttgatttggttacaattttcaattgttactaaat 29553626  T
Q  164 ctcaattatgttgtagtg 181  Q
    |||||| |||||||||||    
T  29553625 ctcaatcatgttgtagtg 29553608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 25638923 - 25638806
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||  ||| ||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  25638923 ataaaatgtaactaaaacactttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 25638824  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  25638823 attttcaagtgttactaa 25638806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 28249059 - 28249176
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  28249059 ataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 28249158  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  28249159 attttcaagtgttactaa 28249176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 45356096 - 45356210
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| |||||||||||| ||  ||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  45356096 ataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttaca 45356195  T
Q  144 ttttttaattgttac 158  Q
     |||| || ||||||    
T  45356196 attttcaagtgttac 45356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 5000778 - 5000661
Alignment:
Q  61 ctctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttacta 160  Q
    |||||||||||||||||| | ||||||| |||| ||| | ||||||||||||||||||||||| ||||  |||| |||| ||| |||| |||||| ||||    
T  5000778 ctctttagtaacacaggtttcacctaactattgctcaaatgttactaaatttaattagtaacaattttgatgatgtagtaacaattttcaattgtaacta 5000679  T
Q  161 aatctcaattatgttgta 178  Q
     |||||||||||||||||    
T  5000678 gatctcaattatgttgta 5000661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 17634473 - 17634574
Alignment:
Q  62 tctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaa 161  Q
    ||||||||||||| ||  ||||||| ||||||||||   |||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  17634473 tctttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttactaa 17634572  T
Q  162 at 163  Q
    ||    
T  17634573 at 17634574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 5528846 - 5528740
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    ||||||||||||||||||||   ||| ||||||||||||     ||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||    
T  5528846 aaaactctttagtaacacagactttatctaacaattgtttgagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgtt 5528747  T
Q  157 actaaat 163  Q
    |||||||    
T  5528746 actaaat 5528740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 5650965 - 5651066
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    |||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||||| | | |||| || ||||||| || ||||||||||||| ||    
T  5650965 ttacctaacaattgttcaaatgttgctaaattgaattagtaacatttttcttgatttagtaatagttttcaagtgttactgaaactcaattatgttgcag 5651064  T
Q  180 tg 181  Q
    ||    
T  5651065 tg 5651066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 25637769 - 25637641
Alignment:
Q  36 aataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgat 134  Q
    |||||||| ||||||| | || |||| ||||||||||||| ||  |||||||||||||||||    ||| ||||||||||||||||||| ||||||| ||    
T  25637769 aataatactataaaatgtaactaaaattctttagtaacacgggctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttcttaat 25637670  T
Q  135 ttagttacattttttaattgttactaaat 163  Q
    ||||||||| |||| || |||||||||||    
T  25637669 ttagttacaattttcaagtgttactaaat 25637641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 29345511 - 29345443
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttt 148  Q
    |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  29345511 ttacctaacaattgttcaaaggttactaaatttaattagtaatatttttcttgatttagttacaatttt 29345443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 19448564 - 19448445
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||||| || |||||||||||||||||| |   ||| |||||||||||||    ||| | |||||||||||||||||||||||||||||||||||||    
T  19448564 ataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttaca 19448465  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||| ||||||    
T  19448464 attttcaagtgttgctaaat 19448445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 19532512 - 19532631
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||||| || |||||||||||||||||| |   ||| |||||||||||||    ||| | |||||||||||||||||||||||||||||||||||||    
T  19532512 ataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttaca 19532611  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||| ||||||    
T  19532612 attttcaagtgttgctaaat 19532631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 19369894 - 19370013
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||||||||||| |   ||| |||||||||||||    ||| | |||||||||||||||||||||||||||||||||||||    
T  19369894 ataaaatgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttaca 19369993  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||| ||||||    
T  19369994 attttcaagtgttgctaaat 19370013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 26173880 - 26173781
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    |||||||||| || | ||||||||||||||| ||| |||||||||||  ||| ||||||| | ||||||||| ||||||||||||||| || ||||||||    
T  26173880 ttacctaacatttatacagaagttactaaatataaatagtaacattt--ctttatttagtaatattttttaagtgttactaaatctcatttttgttgtag 26173783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 31369104 - 31369225
Alignment:
Q  58 aaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtta 157  Q
    |||||||||||||||| | |  |||| ||||| ||||| | | || |||||| |||||||||||||||| || |||||||||| ||||||| || |||||    
T  31369104 aaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttatcgtgatttagtttcatttttcaaatgtta 31369203  T
Q  158 ctaaatctcaattatgttgtag 179  Q
     |||||||||| | ||||||||    
T  31369204 ttaaatctcaactttgttgtag 31369225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 14997765 - 14997600
Alignment:
Q  17 acattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaat 115  Q
    ||||||| ||||||||||   |||||| ||||||  | || ||| |||||||||||||  ||| ||||||||||||| | || | |||||||| |||||     
T  14997765 acattttttgaatgttacagttaatactataaaaggtaactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaac 14997666  T
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
     ||||||||||||||||| ||||| | | |||| || ||| |||| || ||||| |||||||||||    
T  14997665 cagtaacatttttcttgaattagtaataattttcaagtgtcactagatgtcaatcatgttgtagtg 14997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 19371273 - 19371376
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacattt-ttcttgatttagttacattttttaattgttactaaa 162  Q
    |||||||||||||   |||||||||| |||| || | ||||| | || ||| ||||||||||| || |||||||||||||| |||| |||||||||||||    
T  19371273 tttagtaacacagtctttacctaacatttgt-caaatgttacaagatctaaatagtaacatttatttttgatttagttacaattttgaattgttactaaa 19371371  T
Q  163 tctca 167  Q
    |||||    
T  19371372 tctca 19371376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 18767033 - 18766914
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||||||||||||||||     ||||||||||||||||     ||| | ||||||||||| ||| |||||||||||||||||||||    
T  18767033 ataaaatgtaactaaaactctttagtaacacgtactttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttcttgatttagttaca 18766934  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||| ||||||    
T  18766933 attttcaagtgttgctaaat 18766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 19341476 - 19341542
Alignment:
Q  116 tagtaacattt-ttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||| || |||||||||||||| |||| |||||||||||||||| |  ||||||||||||    
T  19341476 tagtaacatttatttttgatttagttacaattttgaattgttactaaatcttatatatgttgtagtg 19341542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 7292885 - 7292813
Alignment:
Q  108 aatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||||||||||||||||||| | ||||| ||| ||| |||| || ||||| ||||| |||||||||||||||||    
T  7292885 aatttaattagtaacatttt-catgattcagtaacaattttcaagtgttattaaatgtcaattatgttgtagtg 7292813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 29386540 - 29386460
Alignment:
Q  102 ttactaaatttaattagtaacatttttcttg--atttagttacattttttaattgttactaaatctcaattatgttgtagt 180  Q
    ||||||||| ||| ||||||||||||| ||   ||||| ||||||||||||| |||||||||||||||  ||| |||||||    
T  29386540 ttactaaatctaaatagtaacatttttttttttatttacttacattttttaaatgttactaaatctcatatattttgtagt 29386460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 6223504 - 6223434
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttt 127  Q
    ||||||||||||||||||  |  ||||||||||||| | || | ||||||||||||||| |||||| ||||    
T  6223504 aaaactctttagtaacacgcgctttacctaacaattttacaaatgttactaaatttaatcagtaacgtttt 6223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 44719155 - 44719197
Alignment:
Q  141 acattttttaattgttactaaatctcaattatgttgtagtgat 183  Q
    |||||||| || |||||||||||||||| ||||||||||||||    
T  44719155 acatttttcaaatgttactaaatctcaagtatgttgtagtgat 44719197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 6795 - 6698
Alignment:
Q  64 tttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaa 161  Q
    ||||||||||| ||  ||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  6795 tttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaa 6698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 3234471 - 3234306
Alignment:
Q  17 acattttatgaatgttactaataatacataaaatattaccaaaactctttagtaacacaggtattacctaacaa-ttgttcagaagttactaaatttaat 115  Q
    ||||||| ||||||||||||||||||||| |||| ||||  || || ||||||||||| |   |||||||| || ||| ||| | ||||||||||| | |    
T  3234471 acattttttgaatgttactaataatacattaaatgttactgaagctatttagtaacacggactttacctaataaattggtcaaatgttactaaattaatt 3234372  T
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||| ||||||| || |||||||||||||||| || ||||||||||||| ||||||| |||||||    
T  3234371 tagtaccatttttttttatttagttacatttttcaactgttactaaatcttaattatgctgtagtg 3234306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 30089871 - 30089716
Alignment:
Q  25 tgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaaca 123  Q
    |||||||||  |||||||| ||||||| | || ||| |||||||||||||  ||  || ||||||||||||||| | |||||||||| |||| |||||||    
T  30089871 tgaatgttaaaaataatactataaaatgtaactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataatcagtaaca 30089772  T
Q  124 tttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtag 179  Q
    |||||||||||||||| ||| |||| || |||||||| || |||||||| ||||||    
T  30089771 tttttcttgatttagtaacagttttcaagtgttactagatgtcaattattttgtag 30089716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 26224975 - 26225081
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    |||||||||||||||||| ||  |||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||||||| |||| || ||||    
T  26224975 aaaactctttagtaacaccggctttacctaataattgttcaagtgttactaaatttaattagtatcatttttcttgatttagttacaattttcaagtgtt 26225074  T
Q  157 actaaat 163  Q
    | |||||    
T  26225075 attaaat 26225081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 26608540 - 26608660
Alignment:
Q  61 ctctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttacta 160  Q
    |||||||||||||  ||  ||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  | ||| |||| || ||||||||    
T  26608540 ctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttcttgatttcataacaattttcaaatgttacta 26608639  T
Q  161 aatctcaattatgttgtagtg 181  Q
     || |||||||||||||||||    
T  26608640 gatgtcaattatgttgtagtg 26608660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 10022240 - 10022121
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||| |||||||||||||  |  ||||||||||||||||||   ||||||||| ||||||||||||||||||  |||||||||||||    
T  10022240 ataaaatgtaactaaaattctttagtaacacgagctttacctaacaattgttcatgtgttactaaacttaattagtaacattttttctgatttagttaca 10022141  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| ||||||||||||||    
T  10022140 attttcaattgttactaaat 10022121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 4685387 - 4685504
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || ||||| ||||||||| || ||  ||||||||||||||||||   ||| ||||||||||||| |||||||||||||||||||||||||    
T  4685387 ataaaatgtaactaaaacactttagtaatacgggctttacctaacaattgttcaagtgttgctaaatttaattactaacatttttcttgatttagttaca 4685486  T
Q  144 ttttttaattgttactaa 161  Q
     |||| || |||||||||    
T  4685487 attttcaagtgttactaa 4685504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 26619068 - 26619223
Alignment:
Q  25 tgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaaca 123  Q
    |||||||||| |||||||| || |||| | || |||  |||||||||||| |||  ||||||| |||||||||| | |||| |||||||||| |||||||    
T  26619068 tgaatgttacaaataatactatcaaatgtaactaaagttctttagtaacataggatttaccta-caattgttcaaatgttaataaatttaatcagtaaca 26619166  T
Q  124 tttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||||||||||||||| |||  ||| || |||||||| || |||||||||||||||||    
T  26619167 tttttcttgatttagtaaca-atttcaagtgttactagatgtcaattatgttgtagtg 26619223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 26205412 - 26205518
Alignment:
Q  57 aaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtt 156  Q
    ||||||||||||||||||  |  ||||||| ||||| ||||   ||||||||||||||||||||||||||||||||||||||||| | |||| || |||     
T  26205412 aaaactctttagtaacaccagctttacctaccaatttttcaagtgttactaaatttaattagtaacatttttcttgatttagttataattttcaagtgtc 26205511  T
Q  157 actaaat 163  Q
    |||||||    
T  26205512 actaaat 26205518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 26621055 - 26621212
Alignment:
Q  25 tgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaaca 123  Q
    ||||||||||  ||||||| ||||||| | || ||| |||||||||||||  | | ||| |||||||||||| | | ||| ||||||||||| |||||||    
T  26621055 tgaatgttacagataatactataaaatgtaactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaatttaatcagtaaca 26621154  T
Q  124 tttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||||||| ||||||| ||| |||| || |||||||| || || |||| |||||||||    
T  26621155 tttttcttaatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 26621212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 9242468 - 9242587
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||||||||||  |   ||| ||||||||||||||   ||||| ||||||||||||||||| |||||||||||||||||||    
T  9242468 ataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttcttgatttagttaca 9242567  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||| ||||||    
T  9242568 attttcaagtgttgctaaat 9242587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 27136061 - 27135905
Alignment:
Q  29 tgttactaataatacataaaa-tattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttt 127  Q
    |||||||||||||||  |||| | ||||| ||||||||||||||||||||  ||| |||||||||||||| | |||| || || |||| | |||||||||    
T  27136061 tgttactaataataccaaaaactgttaccgaaactctttagtaacacaggctttatctaacaattgttcaaatgttattagatataatcaataacatttt 27135962  T
Q  128 tctt----gatttagttacatttt-ttaattgttactaaatctcaattatgttgtag 179  Q
    ||||    |||||||| |||||||   || |||||||||| ||||||||||||||||    
T  27135961 tctttcgggatttagtaacattttgaaaaatgttactaaaactcaattatgttgtag 27135905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 14803115 - 14803181
Alignment:
Q  115 ttagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||| ||||||||||||||||||||||||||||| ||  ||||||| ||||||||| ||||||||||    
T  14803115 ttagcaacatttttcttgatttagttacatttttcaaccgttactagatctcaattttgttgtagtg 14803181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 15250109 - 15250175
Alignment:
Q  115 ttagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    |||| ||||||||||||||||||||||||||||| ||  ||||||| ||||||||| ||||||||||    
T  15250109 ttagcaacatttttcttgatttagttacatttttcaaccgttactagatctcaattttgttgtagtg 15250175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 20277380 - 20277448
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttt 148  Q
    |||||||||||||||| | | ||||||||||||||||| ||| |||||| |||||||||||||| ||||    
T  20277380 ttacctaacaattgtttaaatgttactaaatttaattaataatattttttttgatttagttacaatttt 20277448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 16170351 - 16170268
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    |||||||||||||||| |   ||||||||||||||||||||||| ||||  |||||| |||||| |||| || |||| ||||||    
T  16170351 ttacctaacaattgtttaagtgttactaaatttaattagtaacactttttgtgatttggttacaattttcaagtgttgctaaat 16170268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 26701175 - 26701098
Alignment:
Q  16 aacattttatgaatgttactaataatacataaaatattaccaaaactctttagtaacacaggtattacctaacaattg 93  Q
    |||||||| |||||||||||||||||||||||| | ||||  ||  | ||||||||||| ||  ||||||||||||||    
T  26701175 aacattttctgaatgttactaataatacataaagtgttactgaagttatttagtaacacgggctttacctaacaattg 26701098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 29932345 - 29932469
Alignment:
Q  56 caaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgt 155  Q
    ||||||||||||||  || |||  ||||||||||||||| || | |||| ||  | |||| | |||||||||||  |||||||| | |||||| || |||    
T  29932345 caaaactctttagtctcataggctttacctaacaattgtccaaatgttattagttataatca-taacatttttcgcgatttagtaatatttttcaaatgt 29932443  T
Q  156 tactaaatctcaattatgttgtagtg 181  Q
    ||||||| | ||||||||||||||||    
T  29932444 tactaaaacgcaattatgttgtagtg 29932469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 24731810 - 24731876
Alignment:
Q  116 tagtaacattt-ttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 181  Q
    ||||||||||| || |||||||| ||||| |||| || |||||||||||||||  ||||||||||||    
T  24731810 tagtaacatttatttttgatttaattacaattttgaagtgttactaaatctcatatatgttgtagtg 24731876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 3374374 - 3374325
Alignment:
Q  87 acaattgttcagaagttactaaatttaattagtaacatttttcttgattt 136  Q
    ||||||||||| | |||||| |||||||| | ||||||||||||||||||    
T  3374374 acaattgttcaaatgttacttaatttaatcaataacatttttcttgattt 3374325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 7711412 - 7711473
Alignment:
Q  116 tagtaacattt-ttcttgatttagttacattttttaattgttactaaatctcaattatgttg 176  Q
    ||||||||||| || |||||||||||||| |||  || ||||||||||||||| ||||||||    
T  7711412 tagtaacatttgtttttgatttagttacaatttagaagtgttactaaatctcatttatgttg 7711473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 16086567 - 16086510
Alignment:
Q  80 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgattta 137  Q
    ||||||||||||| |||| | |||| |||||||||||||||||| ||||  |||||||    
T  16086567 ttacctaacaattattcaaatgttattaaatttaattagtaacagtttttctgattta 16086510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 28312721 - 28312660
Alignment:
Q  116 tagtaacattt-ttcttgatttagttacattttttaattgttactaaatctcaattatgttg 176  Q
    ||||||||||| || ||||||||||| || |||| ||||||||||||||||||  |||||||    
T  28312721 tagtaacatttgtttttgatttagttgcaattttgaattgttactaaatctcatatatgttg 28312660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 8803 - 8723
Alignment:
Q  101 gttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtga 182  Q
    ||||||| ||| | |||||||||||||  || |||||||||||||||| || ||||||||||||| ||||||||||||||||    
T  8803 gttactatattcatttagtaacattttgttt-atttagttacatttttcaactgttactaaatcttaattatgttgtagtga 8723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 446236 - 446397
Alignment:
Q  14 gtaacattttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaattt 112  Q
    |||||||||| | |||||||||| || ||| ||||| | |||| ||| ||||||||||| |  |   || ||||||||||||||| | ||||| ||||||    
T  446236 gtaacatttttttaatgttactactactactataaagtgttactaaagctctttagtaatatggacttttcctaacaattgttcaaatgttaccaaattt 446335  T
Q  113 aattagtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgt 174  Q
    |||| |||||| |||   ||||||||||||| | ||  |||||||||| |||||||||||||    
T  446336 aattggtaacaatttgtatgatttagttacaatcttcgattgttactagatctcaattatgt 446397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 731 - 850
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||||||||||  |   ||| |||||||||||||    ||| | ||||||||||||||||| |||||||||||||||||||    
T  731 ataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttaca 830  T
Q  144 ttttttaattgttactaaat 163  Q
     |||| || |||| ||||||    
T  831 attttcaagtgttgctaaat 850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 40682 - 40786
Alignment:
Q  44 ataaaatattaccaaaactctttagtaacacaggtattacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttaca 143  Q
    ||||||| | || |||||||||||||||||  |   ||| |||||||||||||    ||| | ||||||||||||||||| |||||||||||||||||||    
T  40682 ataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttaca 40781  T
Q  144 ttttt 148  Q
     ||||    
T  40782 atttt 40786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 692 - 645
Alignment:
Q  116 tagtaacatttttcttgatttagttacattttttaattgttactaaat 163  Q
    ||||||||||||| || ||||||||||| ||||||| |||||||||||    
T  692 tagtaacatttttttttatttagttacaatttttaagtgttactaaat 645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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