View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6527_low_23 (Length: 230)
Name: NF6527_low_23
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6527_low_23 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 43617651 - 43617441
Alignment:
| Q |
6 |
agttgctgggaaaactggtccttttttgtcaatcaccaatgcttgcaagtaatatgcaactgcagtcactagtgtcccctgttacatttaaggtaatata |
105 |
Q |
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| T |
43617651 |
agttgctgggaaaactggtccttttttatcaatcaccaatgcttgcaagtaatatgcaactgcagtcactagtgtcccctgttacatttaaggtaa---- |
43617556 |
T |
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| Q |
106 |
ttatagataatcatcaactctaaattctaatggtacaacttttggatgtttattcctcttattcctaattattttcctctaatttaaactgaaaaattat |
205 |
Q |
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| T |
43617555 |
-tatagataatcatcaactctaaattctaatggtacaacttttggatgt---------ttattcctaattattttcctctaatttaaagtgaaaaattat |
43617466 |
T |
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| Q |
206 |
caaacatgagtacatgaccaacatt |
230 |
Q |
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| T |
43617465 |
caaacatgagtacatgaccaacatt |
43617441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 43610770 - 43610650
Alignment:
| Q |
6 |
agttgctgggaaaactggtccttttttgtcaatcaccaatgcttgcaagtaatatgcaactgcagtcactagtgtcccctgttacatttaaggtaatata |
105 |
Q |
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| T |
43610770 |
agttgctgggaaaactggtcctttcttctcaatcaccaatgcttgcaagtagtaggcaactgcagtcactagtgtcccctgttacatttaggata--ata |
43610673 |
T |
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| Q |
106 |
ttatagataatcatcaactctaa |
128 |
Q |
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| T |
43610672 |
atatagataatcatcaactctaa |
43610650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 43604305 - 43604216
Alignment:
| Q |
6 |
agttgctgggaaaactggtccttttttgtcaatcaccaatgcttgcaagtaatatgcaactgcagtcactagtgtcccctgttacattta |
95 |
Q |
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| T |
43604305 |
agttgctgagaaaactggtcctctcttctcaatcaccaatgcttgcaggtaatatgaaactccagtcactagtaccccctgtttcattta |
43604216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 43610622 - 43610573
Alignment:
| Q |
171 |
taattattttcctctaatttaaac-tgaaaaattatcaaacatgagtaca |
219 |
Q |
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| T |
43610622 |
taattattttcctctaatttaaacttaaaaaaatatcaaacatgagtaca |
43610573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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