View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6527_low_4 (Length: 405)

Name: NF6527_low_4
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6527_low_4
NF6527_low_4
[»] chr1 (5 HSPs)
chr1 (124-215)||(44043632-44043723)
chr1 (317-405)||(44043724-44043812)
chr1 (1-53)||(44043586-44043638)
chr1 (158-207)||(26778590-26778639)
chr1 (143-187)||(5904535-5904579)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 44043632 - 44043723
Alignment:
Q  124 tcaattttgggattaatcaaaatagctagaacgcccctgaattttataatattcaatcaatttagtctatccgtcaagtctcgcgcgttgac 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44043632 tcaattttgggattaatcaaaatagctagaacgcccctggattttataatattcaatcaatttagtctatccgtcaagtctcgcgcgttgac 44043723  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 44043724 - 44043812
Alignment:
Q  317 tttcaataaaaaaggaagaatatttgttaccggttctttggtgataattcagatgttggaataaaatgcatggaacaacacgtaaacaa 405  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  44043724 tttcaataaaaaatgaagaatatttgttactggttctttggtgataatttagatgttggaataaaatgcatggaacaacacataaacaa 44043812  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44043586 - 44043638
Alignment:
Q  1 agaatattaagatttgtttgatttgatttatctatccggttcttgttcaattt 53  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44043586 agaatattaagatttgtttgatttgatttatctattcggttcttgttcaattt 44043638  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 26778590 - 26778639
Alignment:
Q  158 ccctgaattttataatattcaatcaatttagtctatccgtcaagtctcgc 207  Q
    |||||||||||||||   |||||||||||||||| |||||||||||||||    
T  26778590 ccctgaattttataaacgtcaatcaatttagtctctccgtcaagtctcgc 26778639  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 5904535 - 5904579
Alignment:
Q  143 aaatagctagaacgcccctgaattttataatattcaatcaattta 187  Q
    |||||||||||| | | |||||||||||||||||| |||||||||    
T  5904535 aaatagctagaatgtctctgaattttataatattctatcaattta 5904579  T

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