View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6527_low_8 (Length: 355)

Name: NF6527_low_8
Description: NF6527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6527_low_8
NF6527_low_8
[»] chr2 (24 HSPs)
chr2 (13-291)||(29045835-29046112)
chr2 (13-291)||(22404324-22404602)
chr2 (13-280)||(16329441-16329708)
chr2 (13-288)||(27976491-27976772)
chr2 (13-288)||(28063019-28063300)
chr2 (13-233)||(16130430-16130653)
chr2 (275-337)||(16130637-16130699)
chr2 (275-337)||(27976727-27976789)
chr2 (275-337)||(28063255-28063317)
chr2 (275-337)||(16329416-16329478)
chr2 (275-337)||(22404310-22404372)
chr2 (275-337)||(29046064-29046126)
chr2 (217-284)||(16130611-16130678)
chr2 (216-336)||(22404211-22404341)
chr2 (216-276)||(27976758-27976818)
chr2 (216-276)||(28063286-28063346)
chr2 (216-276)||(29046095-29046155)
chr2 (275-308)||(16130737-16130770)
chr2 (275-308)||(16130785-16130818)
chr2 (275-308)||(27976785-27976818)
chr2 (275-308)||(27976862-27976895)
chr2 (275-308)||(28063313-28063346)
chr2 (275-308)||(28063390-28063423)
chr2 (275-308)||(29046122-29046155)
[»] chr8 (12 HSPs)
chr8 (13-246)||(9817576-9817809)
chr8 (13-246)||(9884302-9884535)
chr8 (13-291)||(21231216-21231499)
chr8 (13-233)||(42076868-42077092)
chr8 (275-337)||(21231451-21231513)
chr8 (223-291)||(42077056-42077124)
chr8 (275-337)||(42077076-42077138)
chr8 (110-208)||(24423750-24423848)
chr8 (13-87)||(24423902-24423976)
chr8 (147-206)||(29115134-29115193)
chr8 (216-308)||(21231482-21231584)
chr8 (275-308)||(42077176-42077209)
[»] scaffold0022 (3 HSPs)
scaffold0022 (13-296)||(2526-2812)
scaffold0022 (275-337)||(2517-2579)
scaffold0022 (275-308)||(2488-2521)
[»] scaffold0016 (2 HSPs)
scaffold0016 (13-291)||(108397-108674)
scaffold0016 (275-333)||(108387-108445)
[»] chr4 (13 HSPs)
chr4 (13-337)||(18286075-18286415)
chr4 (23-288)||(10335421-10335690)
chr4 (13-214)||(41951453-41951659)
chr4 (90-291)||(41942510-41942713)
chr4 (275-337)||(10335645-10335707)
chr4 (217-337)||(41942613-41942727)
chr4 (217-335)||(31518669-31518786)
chr4 (139-230)||(31518556-31518649)
chr4 (273-337)||(31518634-31518699)
chr4 (216-276)||(41942696-41942756)
chr4 (13-43)||(41942446-41942476)
chr4 (235-303)||(31518785-31518856)
chr4 (216-276)||(10335676-10335736)
[»] chr1 (13 HSPs)
chr1 (13-291)||(13379424-13379705)
chr1 (29-291)||(51442845-51443093)
chr1 (13-320)||(24302410-24302711)
chr1 (190-291)||(51443077-51443177)
chr1 (275-337)||(51443129-51443191)
chr1 (276-337)||(51443046-51443107)
chr1 (217-323)||(24302573-24302682)
chr1 (216-276)||(51443160-51443220)
chr1 (275-338)||(8310829-8310892)
chr1 (275-332)||(13379658-13379714)
chr1 (223-276)||(13379860-13379913)
chr1 (275-308)||(13379880-13379913)
chr1 (275-308)||(51443187-51443220)
[»] chr7 (15 HSPs)
chr7 (13-291)||(9745717-9745998)
chr7 (13-245)||(8312293-8312531)
chr7 (13-233)||(13169975-13170197)
chr7 (191-291)||(13169943-13170043)
chr7 (13-87)||(31211783-31211857)
chr7 (275-337)||(13169929-13169991)
chr7 (104-197)||(46002194-46002287)
chr7 (289-337)||(8312233-8312281)
chr7 (105-165)||(31211669-31211729)
chr7 (216-263)||(13169913-13169960)
chr7 (13-75)||(46002078-46002140)
chr7 (104-165)||(3387939-3388000)
chr7 (275-308)||(9745544-9745577)
chr7 (275-308)||(9745634-9745667)
chr7 (216-276)||(8312204-8312264)
[»] chr3 (23 HSPs)
chr3 (13-337)||(52640682-52641002)
chr3 (21-291)||(15989758-15990029)
chr3 (13-291)||(8655557-8655829)
chr3 (16-291)||(40887974-40888252)
chr3 (13-208)||(19543996-19544187)
chr3 (13-202)||(29454257-29454449)
chr3 (216-320)||(8655295-8655399)
chr3 (275-338)||(40888203-40888267)
chr3 (273-323)||(9013786-9013836)
chr3 (258-320)||(9013803-9013865)
chr3 (274-336)||(19544286-19544347)
chr3 (105-206)||(11649916-11650017)
chr3 (217-298)||(52640972-52641053)
chr3 (279-337)||(15989984-15990043)
chr3 (216-277)||(8655455-8655516)
chr3 (283-335)||(8655545-8655598)
chr3 (13-57)||(11649778-11649822)
chr3 (281-336)||(8655369-8655424)
chr3 (222-291)||(8655382-8655451)
chr3 (275-337)||(19544344-19544410)
chr3 (275-308)||(29454111-29454144)
chr3 (216-265)||(40888235-40888284)
chr3 (275-330)||(8655433-8655489)
[»] scaffold0028 (4 HSPs)
scaffold0028 (13-203)||(147821-148010)
scaffold0028 (236-304)||(148102-148170)
scaffold0028 (275-320)||(148109-148154)
scaffold0028 (283-335)||(148012-148064)
[»] scaffold0150 (1 HSPs)
scaffold0150 (13-203)||(35189-35378)
[»] chr5 (1 HSPs)
chr5 (13-57)||(18926527-18926571)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 29045835 - 29046112
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  29045835 aatatacaaccatcatcaaagaattgtgctaaaacatttctttttaattcaaaatattaatcactttaaaatataccataagaacaaacacaagactcaa 29045934  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataat 212  Q
    || |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  29045935 gattcaatgttgatgcagatgca-tgaatgcaaatagatcatgatccggatatcgccccaattggcataatagttttaatcgccccatttggcatataat 29046033  T
Q  213 aaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    |||||||| ||||||||| |||||||||||||||  ||||| || |||||||||||| |||||||||||||||| ||||    
T  29046034 aaagaatcgccccatttgacatataataataatcgacccatttgacacttaaaaatccattgaatcgccccattcggca 29046112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 22404602 - 22404324
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |||||||||  | |||||||||||||||||||||    
T  22404602 aatatacaaccatcatcaaggaactgtgctaaaacatttctttttaatttaaaatattcatcactctaaaatatactacaagaacaaacacaagactcaa 22404503  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataat 212  Q
    ||||||||||||||||| |||||   |||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||    
T  22404502 gactcaatgttgatgcaaatgcatgaaatgcaaatagagcatgatccggatatcgccccaattggcataatagttttaatcgtcccttttggcatataat 22404403  T
Q  213 aaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    |||||||| | ||||||| |||||||||||||||  ||||| |||||||| |||||| |||||||| || |||||||||    
T  22404402 aaagaatcgctccatttgacatataataataatcgccccatttggcacttcaaaatccattgaatcaccacatttggca 22404324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 16329708 - 16329441
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||| |||| | ||||||| | ||||||||||| || ||| ||||||| ||| |||||||||  | |||||||||||||| ||||||    
T  16329708 aatatacaaccatcatctaggagtcgtgctaagatatttctttttaatttaaactattcattactctaaaatatactaaaagaacaaacacaatactcaa 16329609  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataat 212  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |    
T  16329608 gactcaatgttgatgcagatgcatgaaatgcaaatagaccatgatccggatatcgccccaactagcataatagttttaatcaccccatttggcatatatt 16329509  T
Q  213 aaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgc 280  Q
    |||||||| ||||||||||||||| |||||||||   |||| ||||||||||||||| ||| ||||||    
T  16329508 aaagaatcgccccatttggcatatgataataatcgcgccatttggcacttaaaaatccattaaatcgc 16329441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 27976491 - 27976772
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    |||||||||||||||||||||||||||||||||| | ||  |||||||| ||||||||||||||| ||||||||   |||||||||||||||| ||| ||    
T  27976491 aatatacaaccatcatcaaggaattgtgctaaaataatttcttttagtttaaaatattcatcactctaaaatatgctataagaacaaacacaatactaaa 27976590  T
Q  113 gactcaatgttgatgcagatgcaa-----tgaa-tgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggca 206  Q
     ||||||||||||||  |||||||     |||| |||||||||| |||||||| ||||| ||||||| |||||||||||||||||||| |||||||  |     
T  27976591 tactcaatgttgatgatgatgcaaatgcatgaaatgcaaatagatcatgatccagatatcgccccaattggcataatagttttaatcgacccatttaact 27976690  T
Q  207 tataataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttg 288  Q
    |||||||||||||||||||||||  | ||| |||||||||  ||||| || |||||||||||| ||||||||||||||||||    
T  27976691 tataataaagaatcaccccatttaacttatcataataatcgccccatttgacacttaaaaatccattgaatcgccccatttg 27976772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 28063019 - 28063300
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    |||||||||||||||||||||||||||||||||| | ||  |||||||| ||||||||||||||| ||||||||   |||||||||||||||| ||| ||    
T  28063019 aatatacaaccatcatcaaggaattgtgctaaaataatttcttttagtttaaaatattcatcactctaaaatatgctataagaacaaacacaatactaaa 28063118  T
Q  113 gactcaatgttgatgcagatgcaa-----tgaa-tgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggca 206  Q
     ||||||||||||||  |||||||     |||| |||||||||| |||||||| ||||| ||||||| |||||||||||||||||||| |||||||  |     
T  28063119 tactcaatgttgatgatgatgcaaatgcatgaaatgcaaatagatcatgatccagatatcgccccaattggcataatagttttaatcgacccatttaact 28063218  T
Q  207 tataataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttg 288  Q
    |||||||||||||||||||||||  | ||| |||||||||  ||||| || |||||||||||| ||||||||||||||||||    
T  28063219 tataataaagaatcaccccatttaacttatcataataatcgccccatttgacacttaaaaatccattgaatcgccccatttg 28063300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 16130430 - 16130653
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatca----taagaacaaacacaagac 108  Q
    ||||||||||||||||| || | | ||||||| | ||||||||| | || ||||||||||| ||| |||||||||  |    ||||||||||||||| ||    
T  16130430 aatatacaaccatcatctagcagtcgtgctaagatatttcttttaaatttaaaatattcattactctaaaatatactaaaattaagaacaaacacaatac 16130529  T
Q  109 tcaagactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcata 208  Q
    | |||||||||||||||||||||||||   ||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||    
T  16130530 ttaagactcaatgttgatgcagatgcatgaaatgcaaatagaccatgatccagatatcgctccaactggcataatagttttaatcgccccatttcgcata 16130629  T
Q  209 taataaagaatcaccccatttggca 233  Q
    | || || |||| ||||||||||||    
T  16130630 tgat-aataatcgccccatttggca 16130653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 16130637 - 16130699
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  16130637 aatcgccccatttggcacttaaaaatccattgaatcgccccaattgacatataataataatcg 16130699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 27976727 - 27976789
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  27976727 aatcgccccatttgacacttaaaaatccattgaatcgccccatttgacatataataataatcg 27976789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 28063255 - 28063317
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  28063255 aatcgccccatttgacacttaaaaatccattgaatcgccccatttgacatataataataatcg 28063317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 16329478 - 16329416
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||| |||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||    
T  16329478 aatcgcgccatttggcacttaaaaatccattaaatcgctccaattgacatataataataatcg 16329416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 22404372 - 22404310
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||||||||||||||||| ||||||||||||||  || |||||| ||||||||||||||||    
T  22404372 aatcgccccatttggcacttcaaaatccattgaatcaccacatttggcatataataataatcg 22404310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 29046064 - 29046126
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    ||||| |||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||    
T  29046064 aatcgacccatttgacacttaaaaatccattgaatcgccccattcggcatataataataatcg 29046126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 16130611 - 16130678
Alignment:
Q  217 aatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgcccca 284  Q
    |||| |||||||| |||||| |||||||||  ||||| ||||||||||||||| ||||||||||||||    
T  16130611 aatcgccccatttcgcatatgataataatcgccccatttggcacttaaaaatccattgaatcgcccca 16130678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 336
Target Start/End: Complemental strand, 22404341 - 22404211
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa----------tcgccccatttggcacttaaaaatccatt 305  Q
    |||||||| ||||||||||||||||||||||  ||||| || ||||||||| || ||| ||          |||||||| ||| ||||||||||| || |    
T  22404341 gaatcaccacatttggcatataataataatcgccccatttgacacttaaaattccattcaaataataataatcgccccaattgacacttaaaaattcaat 22404242  T
Q  306 gaattgccccatttgacatataataataatc 336  Q
    |||| ||||||||||||||| ||||||||||    
T  22404241 gaatcgccccatttgacataaaataataatc 22404211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 27976758 - 27976818
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa 276  Q
    ||||| ||||||||| |||||||||||||||  ||||| ||||||||| ||||| ||||||    
T  27976758 gaatcgccccatttgacatataataataatcgccccatttggcacttataaatccattgaa 27976818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 28063286 - 28063346
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa 276  Q
    ||||| ||||||||| |||||||||||||||  ||||| ||||||||| ||||| ||||||    
T  28063286 gaatcgccccatttgacatataataataatcgccccatttggcacttataaatccattgaa 28063346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 29046095 - 29046155
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa 276  Q
    ||||| ||||||| |||||||||||||||||  ||||| ||||||||| ||||| ||||||    
T  29046095 gaatcgccccattcggcatataataataatcgccccatttggcacttataaatccattgaa 29046155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 16130737 - 16130770
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    |||||||||||||||||||||| |||||||||||    
T  16130737 aatcgccccatttggcacttaagaatccattgaa 16130770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 16130785 - 16130818
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  16130785 aatcgccccatttggcacttataaatccattgaa 16130818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 27976785 - 27976818
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  27976785 aatcgccccatttggcacttataaatccattgaa 27976818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 27976862 - 27976895
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    |||||||||||||| |||||||||||||||||||    
T  27976862 aatcgccccatttgacacttaaaaatccattgaa 27976895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 28063313 - 28063346
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  28063313 aatcgccccatttggcacttataaatccattgaa 28063346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 28063390 - 28063423
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    |||||||||||||| |||||||||||||||||||    
T  28063390 aatcgccccatttgacacttaaaaatccattgaa 28063423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 29046122 - 29046155
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  29046122 aatcgccccatttggcacttataaatccattgaa 29046155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 9817576 - 9817809
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9817576 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatataacataagaacaaacacaagactcaa 9817675  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataat 212  Q
    || ||||||||||||||||||||   |||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||    
T  9817676 gattcaatgttgatgcagatgcatgaaatgcaaatagatcatgatccggatatcgccccaattgacataatagttttaatcgccccatttggcatataat 9817775  T
Q  213 aaagaatcaccccatttggcatataataataatc 246  Q
    |||||||| |||||||||||||||||||||||||    
T  9817776 aaagaatcgccccatttggcatataataataatc 9817809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 9884535 - 9884302
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||| ||||| || |||    
T  9884535 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcacactaaaatatactataagaacaagcacaaaacccaa 9884436  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataat 212  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||    
T  9884435 gactcaatgttgatgcagatgcatgaaatgcaaatagaccatgatccggatatcgccccaattggcataatagttttaatcgtcccatttgacatataat 9884336  T
Q  213 aaagaatcaccccatttggcatataataataatc 246  Q
    || ||||| ||| |||||||||||||||||||||    
T  9884335 aaggaatcgcccaatttggcatataataataatc 9884302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 21231216 - 21231499
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaaca-tttcttttt-agttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactc 110  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||| ||||||||   |||||||| ||||||||||      
T  21231216 aatatacaaccatcatcaaggaattgtgctaaaataatttcttttttagtttaaaatattcatcactctaaaatatgctataagaactaacacaagacca 21231315  T
Q  111 aagactcaatgttgatg---cagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcat 207  Q
    ||| |||||||||||||   || || ||   |||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  21231316 aagcctcaatgttgatgatgcaaatccatgaaatgcaaatagatcatgatccggatatcgccccaattggcataatagttttaatcgtcccatttggcat 21231415  T
Q  208 ataataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    |||||||| ||||||| |||||||||||| |||||||||  ||||| ||||||||||||||| |||||||||||||| ||||||    
T  21231416 ataataaaaaatcacctcatttggcatatgataataatcgccccatttggcacttaaaaatccattgaatcgccccaattggca 21231499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 42076868 - 42077092
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaaca-tttctttttagttcaaaatattcatcactttaaaatata-tcataagaacaaacacaagactc 110  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||||| ||||||||  ||||| ||||||||  | |||||||||||||||||||      
T  42076868 aatatacaaccatcatcaaggaattgtgctataataatttctttttagtttaaaatatttgtcactctaaaatatgcttataagaacaaacacaagacca 42076967  T
Q  111 aagactcaatgttgatg---cagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcat 207  Q
    |||||||||||||||||   || |||||   |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  42076968 aagactcaatgttgatgatgcaaatgcatgaaatgcaaacagaccatgatccggatatcgccccaattggcataatagttttaatcgtcccatttggcat 42077067  T
Q  208 ataataaagaatcaccccatttggca 233  Q
    ||||| || |||| ||||||||||||    
T  42077068 ataat-aataatcgccccatttggca 42077092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 21231451 - 21231513
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  21231451 aatcgccccatttggcacttaaaaatccattgaatcgccccaattggcatataataataatcg 21231513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 42077056 - 42077124
Alignment:
Q  223 cccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||||    
T  42077056 cccatttggcatataataataatcgccccatttggcacttaaaaatccattgaatcgcctcatttggca 42077124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 42077076 - 42077138
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||    
T  42077076 aatcgccccatttggcacttaaaaatccattgaatcgcctcatttggcatataattataatcg 42077138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 24423848 - 24423750
Alignment:
Q  110 caagactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcata 208  Q
    |||||||||||| | ||||||| |||   ||||||| || |||||||||||||||| ||||||  |||||||| | | |||||| ||||||||||||||    
T  24423848 caagactcaatgctaatgcagaggcatgaaatgcaactataccatgatccggatatcgccccatttggcataacaatattaatcaccccatttggcata 24423750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 24423976 - 24423902
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatata 87  Q
    ||||||||||| ||||||| |||||||| ||| |||||||||||||||| ||||| ||| |||||  ||||||||    
T  24423976 aatatacaaccgtcatcaaagaattgtgttaagacatttctttttagtttaaaatgttcttcactccaaaatata 24423902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 29115134 - 29115193
Alignment:
Q  147 tagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggca 206  Q
    ||||||||||||||||||| ||||||| || ||||||| ||||||||  |||||||||||    
T  29115134 tagaccatgatccggatatcgccccaattgacataataattttaatcatcccatttggca 29115193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 21231482 - 21231584
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaatt----------gaatcgccccatttggcacttaaaaatccatt 305  Q
    ||||| ||||| |||||||||||||||||||  ||||| ||||||||| ||||| |||           ||||||||||||||||||||| |||||||||    
T  21231482 gaatcgccccaattggcatataataataatcgccccatttggcacttataaatccattaaaataataataatcgccccatttggcacttagaaatccatt 21231581  T
Q  306 gaa 308  Q
    |||    
T  21231582 gaa 21231584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 42077176 - 42077209
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  42077176 aatcgccccatttggcacttagaaatccattgaa 42077209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 2812 - 2526
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  2812 aatatacaaccatcatcaatgaattgtgttaaaacatttctttttagttcaaaatattcatcactttaaaatataccataagaacaaacacaagaccaaa 2713  T
Q  113 gactcaatgttgatg---cagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatat 209  Q
    |||||||||||||||   || |||||   ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||| |||    
T  2712 gactcaatgttgatgatgcaaatgcatgaaatgcaaatagaccatgatccggatatcgccccaattgacataatagttttaatcaccccatttggcgtat 2613  T
Q  210 aataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggcacttaa 296  Q
    ||||||||||| |||||||||||||||||||||||||  ||||| || |||||||||||| |||||||||||||||||| |||||||    
T  2612 aataaagaatcgccccatttggcatataataataatcgccccatttgacacttaaaaatccattgaatcgccccatttgacacttaa 2526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 2579 - 2517
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||  ||||||||||||    
T  2579 aatcgccccatttgacacttaaaaatccattgaatcgccccatttgacacttaataataatcg 2517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 2521 - 2488
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  2521 aatcgccccatttggcacttataaatccattgaa 2488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 108674 - 108397
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||  |||| |||||||||||||| |||    
T  108674 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatatatatcactctaaaatatactataataacaaacacaagac-caa 108576  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataat 212  Q
    ||||||||||||||||| |||||   |||||||| ||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||    
T  108575 gactcaatgttgatgcaaatgcatgaaatgcaaacagaccatgatccggatatcatcccaattggcataatagttttaatcgccccatttggcatataat 108476  T
Q  213 aaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    |||||||| |||| ||| ||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||||    
T  108475 aaagaatcgccccttttagcatataataataatcgccccatttggcacttaaaaatccattgaatcgcctcatttggca 108397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 108445 - 108387
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataata 333  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  108445 aatcgccccatttggcacttaaaaatccattgaatcgcctcatttggcatataataata 108387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 18286075 - 18286415
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacattt------ctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaag 106  Q
    |||||||| ||||||||||| || |||||||||||||||      ||||||| || ||||||||||||||| |||||||||  | |||||||||||||||    
T  18286075 aatatacatccatcatcaagaaactgtgctaaaacatttcaatttctttttaatttaaaatattcatcactctaaaatatactacaagaacaaacacaag 18286174  T
Q  107 actcaagactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggca 206  Q
    |||| |||||||||||||||||| |||||   |||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| |||||||    
T  18286175 actcgagactcaatgttgatgcaaatgcataaaatgcaaatagagcatgatccggatatcgccccaattgacataatagttttaatcgccccttttggca 18286274  T
Q  207 tataataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattg----------aatcgccccatttggcacttaa 296  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||| ||||          ||||| ||||||||||||||||    
T  18286275 tataataaagaatcgccccatttggcatataataataatcgccccatttggcacttaaaaatccattgaaataataataatcgacccatttggcacttaa 18286374  T
Q  297 aaatccattgaattgccccatttgacatataataataatcg 337  Q
    ||||||||||||| |||||||||| ||||||| || |||||    
T  18286375 aaatccattgaatcgccccatttggcatataacaacaatcg 18286415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 23 - 288
Target Start/End: Original strand, 10335421 - 10335690
Alignment:
Q  23 catcatcaaggaattgtgctaaaaca-tttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaagactcaatg 121  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||   |||||||||||||||||||  |||||||||||    
T  10335421 catcatcaaggaattgtgctaaaataatttctttttagtttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaagactcaatg 10335520  T
Q  122 ttgatg---cagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataataaagaa 218  Q
    ||||||   || ||| |   |||| ||| |||||||||| | ||||| |||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  10335521 ttgatgatgcaaatgtatgaaatgtaaacagaccatgattcagatatcgccccaactttcataatagttttaatcaccccatttggcatataataaagaa 10335620  T
Q  219 tcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttg 288  Q
    |  |||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||    
T  10335621 ttgccccatttggcatataataataatcgccccatttggcacttaaaaatccattgaatcgccccatttg 10335690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 41951453 - 41951659
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaaca-tttctttttagttcaaaatattcatcactttaaaatata-tcataagaacaaacacaagactc 110  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||  | |||||||||||||||||||      
T  41951453 aatatacaaccatcatcaaggaattgtgctaaaataatttctttttagtttaaaatattcgtcactctaaaatatgcttataagaacaaacacaagacca 41951552  T
Q  111 aagactcaatgttgatg---cagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcat 207  Q
    |||||||||||||||||   || |||||   |||||||| |||||||||| ||||||| | | ||| |||||||||||||||||||||||||||||||||    
T  41951553 aagactcaatgttgatgatgcaaatgcatgaaatgcaaacagaccatgattcggatatcgtctcaattggcataatagttttaatcgccccatttggcat 41951652  T
Q  208 ataataa 214  Q
    |||||||    
T  41951653 ataataa 41951659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 90 - 291
Target Start/End: Original strand, 41942510 - 41942713
Alignment:
Q  90 ataagaacaaacacaagactcaagactcaatgttgatg---cagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagt 186  Q
    ||||||||||||| |||||  || ||||||||||||||   || |||||   |||||||| |||||||||||||||||| ||| ||| ||||||||||||    
T  41942510 ataagaacaaacagaagaccaaacactcaatgttgatgatgcaaatgcatgaaatgcaaacagaccatgatccggatatcgcctcaattggcataatagt 41942609  T
Q  187 tttaatcgccccatttggcatataataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatt 286  Q
    |||||||||||||||||||||||||| || ||||  ||||||||||| ||||||||||||  | | | ||||||||||||||| |||||||| | |||||    
T  41942610 tttaatcgccccatttggcatataat-aataatcgtcccatttggcacataataataatcgcctcgtttggcacttaaaaatccattgaatcactccatt 41942708  T
Q  287 tggca 291  Q
    |||||    
T  41942709 tggca 41942713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 10335645 - 10335707
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10335645 aatcgccccatttggcacttaaaaatccattgaatcgccccatttgacatataataataatcg 10335707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 217 - 337
Target Start/End: Original strand, 41942613 - 41942727
Alignment:
Q  217 aatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggcacttaaaaatccattgaattgcccca 316  Q
    |||| ||||||||||||||||||||||||| |||||| |||||| ||| |||      ||||||| | |||||||||||||||||||||||||  | |||    
T  41942613 aatcgccccatttggcatataataataatcgtcccatttggcacataataat------aatcgcctcgtttggcacttaaaaatccattgaatcactcca 41942706  T
Q  317 tttgacatataataataatcg 337  Q
    |||| ||||||||||||||||    
T  41942707 tttggcatataataataatcg 41942727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 31518669 - 31518786
Alignment:
Q  217 aatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggcacttaaaaatccattgaattgcccca 316  Q
    |||| |||||||||||||||| ||||||||  || || |||||||| ||| || |||||||||||| |||||||||||||||||||||  ||| ||||||    
T  31518669 aatcgccccatttggcatatagtaataatcgccctatttggcacttgaaa-tccattgaatcgccc-atttggcacttaaaaatccatcaaatcgcccca 31518766  T
Q  317 tttgacat-ataataataat 335  Q
    |||| ||| |||||||||||    
T  31518767 tttggcataataataataat 31518786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 31518556 - 31518649
Alignment:
Q  139 aatgcaaatagaccatgatccggatattgccccaactggcataatagtttt--aatcgccccatttggcatataataaagaatcaccccatttg 230  Q
    ||||||| ||||||||||||||||||| |||| |  ||||||||| |||||  |||||||||| |||||||| ||||| ||||| |||||||||    
T  31518556 aatgcaagtagaccatgatccggatatcgccctagttggcataattgttttttaatcgccccagttggcatacaataatgaatcgccccatttg 31518649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 31518634 - 31518699
Alignment:
Q  273 tgaatcgccccatttggcacttaaaaatccattg-aattgccccatttgacatataataataatcg 337  Q
    |||||||||||||||| |||||||||| |||||| ||| |||||||||| |||||| |||||||||    
T  31518634 tgaatcgccccatttgccacttaaaaacccattgaaatcgccccatttggcatatagtaataatcg 31518699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 41942696 - 41942756
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa 276  Q
    ||||||| |||||||||||||||||||||||  || || ||||||||| ||||| ||||||    
T  41942696 gaatcactccatttggcatataataataatcgcccaatttggcacttagaaatccattgaa 41942756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 41942446 - 41942476
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgcta 43  Q
    |||||||||||||||||||||||||||||||    
T  41942446 aatatacaaccatcatcaaggaattgtgcta 41942476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 31518785 - 31518856
Alignment:
Q  235 ataataataatcatcccatctggcacttaaaaatca---attgaatcgccccatttggcacttaaaaatcca 303  Q
    ||||||||||||  ||||| || ||||||||||| |   | |||||||||||||||||||||||| ||||||    
T  31518785 ataataataatcgccccatttgacacttaaaaataatccactgaatcgccccatttggcacttaataatcca 31518856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 10335676 - 10335736
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa 276  Q
    ||||| ||||||||| |||||||||||||||  ||||| || |||||| ||||| ||||||    
T  10335676 gaatcgccccatttgacatataataataatcgccccatttgacacttataaatccattgaa 10335736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 13379424 - 13379705
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaa-catttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactca 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||   ||||||||||||||||||| ||    
T  13379424 aatatacaaccatcatcaaggaattgtgctaaaatcatttctttttagtttaaaatattcatcactataaaacatgctataagaacaaacacaagaccca 13379523  T
Q  112 agactcaatgttgat---gcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcata 208  Q
    | |||||||||||||   |||||||||   ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||    
T  13379524 aaactcaatgttgatgatgcagatgcatgaaatgcaaatagaccatgatccggatatcgccccaattggcataatagttttaatcgtcccatttgacata 13379623  T
Q  209 taataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    ||||||||||||  |||||||| |||||||||||||||  | ||| |||||||| |||||||||||||||||| |||||||||    
T  13379624 taataaagaatcgtcccatttgtcatataataataatcgcctcatttggcactt-aaaatcaattgaatcgccacatttggca 13379705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 51442845 - 51443093
Alignment:
Q  29 caaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaagactcaatgttgatgc 128  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||||            ||||||    
T  51442845 caaggaattgtgctaaaacatttctttctaattcaaaatattcatcactttaaaatataccataaaaacaaacacaagactc------------tgatgc 51442932  T
Q  129 agatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataataaagaatcaccccatt 228  Q
    |||||||   |||||||||||| |||||| ||||||| | ||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  51442933 agatgcatgaaatgcaaatagatcatgattcggatatcgtcccaattggcataatagtttaaatcgccccaattggcatataataaagaatcgccccatt 51443032  T
Q  229 tggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    ||||  |||||||| |||  ||||| ||||||||||||||| |||||||||||||||| ||||    
T  51443033 tggc--ataataatgatcgccccatttggcacttaaaaatccattgaatcgccccattcggca 51443093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 24302410 - 24302711
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaa-caaacacaagactca 111  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||||||||| |||||||||  |||||||  ||||||||||| ||    
T  24302410 aatatacaaccatcatcatggaattgtgttaaaacatttcgttttagtttaaaatgttcatcactctaaaatatactataagaagaaaacacaagaccca 24302509  T
Q  112 agactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataa 211  Q
    ||||||||||||               |||||||||||||||||||  |||||| | ||||| ||||||||||||||||||| ||||||||| |||||||    
T  24302510 agactcaatgtt---------------aatgcaaatagaccatgatttggatatcgtcccaattggcataatagttttaatcaccccatttgacatataa 24302594  T
Q  212 taaagaatcaccccatttggca---tataataat------aatcatcccatctggcacttaaaaatcaattgaatcgccccatttggcacttaaaaatcc 302  Q
    | || |||| || ||||||| |    ||||||||      |||||  |||| ||||||||||||||  ||||||||||| |||||| |||||||||||||    
T  24302595 t-aataatcgcctcatttggaacttgataataatccattgaatcactccatttggcacttaaaaattcattgaatcgcctcatttgacacttaaaaatcc 24302693  T
Q  303 attgaattgccccatttg 320  Q
    ||||||||| ||||||||    
T  24302694 attgaattgtcccatttg 24302711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 291
Target Start/End: Original strand, 51443077 - 51443177
Alignment:
Q  190 aatcgccccatttggcatataataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttgg 289  Q
    |||||||||||| ||||||||||||  |||| ||||||| |||||||||||||||||  ||||| || |||||||||||| |||||||||||||||||||    
T  51443077 aatcgccccattcggcatataataat-aatcgccccattcggcatataataataatcgccccatttgacacttaaaaatccattgaatcgccccatttgg 51443175  T
Q  290 ca 291  Q
    ||    
T  51443176 ca 51443177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 51443129 - 51443191
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  51443129 aatcgccccatttgacacttaaaaatccattgaatcgccccatttggcatataataataatcg 51443191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 51443046 - 51443107
Alignment:
Q  276 atcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  51443046 atcgccccatttggcacttaaaaatccattgaatcgccccattcggcatataataataatcg 51443107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 24302573 - 24302682
Alignment:
Q  217 aatcaccccatttggcatataataataatcatcccatctggcactt---aaaaatcaattgaatcgccccatttggcacttaaaaatccattgaattgcc 313  Q
    |||||||||||||| |||||||||||||||  | ||| ||| ||||   || |||| |||||||| | ||||||||||||||||||| |||||||| |||    
T  24302573 aatcaccccatttgacatataataataatcgcctcatttggaacttgataataatccattgaatcactccatttggcacttaaaaattcattgaatcgcc 24302672  T
Q  314 ccatttgaca 323  Q
     |||||||||    
T  24302673 tcatttgaca 24302682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 51443160 - 51443220
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa 276  Q
    ||||| |||||||||||||||||||||||||  ||||| ||||||||| ||||| ||||||    
T  51443160 gaatcgccccatttggcatataataataatcgccccatttggcacttataaatccattgaa 51443220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 8310829 - 8310892
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcgt 338  Q
    |||| ||| |||| |||||||||||||  |||||||||| |||||||||||| |||||||||||    
T  8310829 aatcaccctattttgcacttaaaaatctgttgaattgcctcatttgacatatgataataatcgt 8310892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 13379658 - 13379714
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataat 332  Q
    ||||||| |||||||||||||||| || ||||||| ||| |||||| |||||||||||    
T  13379658 aatcgcctcatttggcacttaaaa-tcaattgaatcgccacatttggcatataataat 13379714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 13379860 - 13379913
Alignment:
Q  223 cccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa 276  Q
    ||||||||| ||||||||||||||  ||||| ||||||||| ||||| ||||||    
T  13379860 cccatttggtatataataataatcgccccatttggcacttataaatccattgaa 13379913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 13379880 - 13379913
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  13379880 aatcgccccatttggcacttataaatccattgaa 13379913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 51443187 - 51443220
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  51443187 aatcgccccatttggcacttataaatccattgaa 51443220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 9745998 - 9745717
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||  |||||||||  ||||||||| |||||||||| ||||||||||||||||||| |||    
T  9745998 aatatacaaccatcatcaaggaattgtgttaaaacatttcttt--agttcaaaag-ttcatcactctaaaatatattataagaacaaacacaagacccaa 9745902  T
Q  113 gactcaatgttgatgcagatgca-----atgaa-tgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggca 206  Q
    ||||||||||||||| |||||||     ||||| |||||||||||||||||| |||||| ||| ||| || |||||||||||||||||||||||||||||    
T  9745901 gactcaatgttgatgtagatgcagatgcatgaaatgcaaatagaccatgatctggatatcgcctcaattgacataatagttttaatcgccccatttggca 9745802  T
Q  207 tataataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    |||| ||||||||| |||||||| |||||| ||||||||| |||||| || ||||||||| || |||||||||||||| ||||||    
T  9745801 tatactaaagaatcgccccatttagcatatgataataatcgtcccatttgacacttaaaattccattgaatcgccccaattggca 9745717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 8312531 - 8312293
Alignment:
Q  13 aatatacaaccatcatcaaggaatt--gtgctaaaa-catttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagact 109  Q
    |||||||| | ||||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||||   |||||||||||||||||||     
T  8312531 aatatacacctatcatcaaggaattatgtgctaaaatcatttctttttagtttaaaatattcatcactctaaaatatgctataagaacaaacacaagacc 8312432  T
Q  110 caagactcaatgttgatg---cagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggca 206  Q
    ||||||||||||||||||   |||||||| | |||| |||||||||||||| |||||||  |||||| |||||||| |||||||||| || |||||||||    
T  8312431 caagactcaatgttgatgatgcagatgcattaaatgtaaatagaccatgattcggatatctccccaattggcataagagttttaatcaccacatttggca 8312332  T
Q  207 tataataaagaatcaccccatttggcatataataataat 245  Q
    ||||||||||||||  |||||||| ||||||||||||||    
T  8312331 tataataaagaatcgtcccatttgacatataataataat 8312293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 13170197 - 13169975
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||  | |||||||||||||||||||||    
T  13170197 aatatacaaccatcgtcaaggaattgtgctaaaacatttctttttaatttaaaaaattcatcactctaaaatatactacaagaacaaacacaagactcaa 13170098  T
Q  113 gactcaatgtt---gatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatat 209  Q
     ||||||||||   ||||||||||||   ||||| |||||||  |||||||||||| ||||||  |||||||  |     ||||||||||||||||||||    
T  13170097 tactcaatgttgatgatgcagatgcatgaaatgctaatagactgtgatccggatatcgccccatttggcatataataaagaatcgccccatttggcatat 13169998  T
Q  210 aataaagaatcaccccatttggca 233  Q
    ||| || |||| ||||||||||||    
T  13169997 aat-aataatcgccccatttggca 13169975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 13170043 - 13169943
Alignment:
Q  191 atcgccccatttggcatataataaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggc 290  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||| |||||||||||    
T  13170043 atcgccccatttggcatataataaagaatcgccccatttggcatataataataatcgccccatttggcacttaaaaatccattgaatcaccccatttggc 13169944  T
Q  291 a 291  Q
    |    
T  13169943 a 13169943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 31211857 - 31211783
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatata 87  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||  ||||||||    
T  31211857 aatatacaaccattatcaaggaattgtgctaagacatttctttttagtttaaaatattcatcactccaaaatata 31211783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 13169991 - 13169929
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||||| |||||||    
T  13169991 aatcgccccatttggcacttaaaaatccattgaatcaccccatttggcatataatcataatcg 13169929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 46002194 - 46002287
Alignment:
Q  104 aagactcaagactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccc 197  Q
    ||||| ||| |||||||  | |||||||||||   ||||||| ||||||||||||  ||||| ||||||| |||||||||| ||||||||||||    
T  46002194 aagacacaatactcaattctaatgcagatgcatgaaatgcaactagaccatgatctagatatcgccccaattggcataatacttttaatcgccc 46002287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 8312281 - 8312233
Alignment:
Q  289 gcacttaaaaatccattgaattgccccatttgacatataataataatcg 337  Q
    |||||||||||| ||||||||   |||||||||||||||||||||||||    
T  8312281 gcacttaaaaattcattgaatcatcccatttgacatataataataatcg 8312233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 31211729 - 31211669
Alignment:
Q  105 agactcaagactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatat 165  Q
    |||| |||||||||||||| |||||||||||   ||||||| |||||||| ||||||||||    
T  31211729 agacacaagactcaatgttaatgcagatgcatgaaatgcaactagaccataatccggatat 31211669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 13169960 - 13169913
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcactta 263  Q
    |||||||||||||||||||||||| ||||||  ||||| |||||||||    
T  13169960 gaatcaccccatttggcatataatcataatcgccccatttggcactta 13169913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 46002078 - 46002140
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatca 75  Q
    ||||||||||||| ||| |||||| ||||||| | ||||||||||||||  ||||||| ||||    
T  46002078 aatatacaaccattatctaggaatcgtgctaagatatttctttttagttttaaatatttatca 46002140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 3388000 - 3387939
Alignment:
Q  104 aagactcaagactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatat 165  Q
    ||||| |||||||||||| | |||||||||||   ||||||| |||||||||||| ||||||    
T  3388000 aagacacaagactcaatggtaatgcagatgcatgaaatgcaagtagaccatgatctggatat 3387939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 9745577 - 9745544
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  9745577 aatcgccccatttggcacttataaatccattgaa 9745544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 9745667 - 9745634
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    |||||||||||||||||||||| |||||||||||    
T  9745667 aatcgccccatttggcacttaagaatccattgaa 9745634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 8312264 - 8312204
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaa 276  Q
    |||||| |||||||| |||||||||||||||  ||||| || |||||| ||||| ||||||    
T  8312264 gaatcatcccatttgacatataataataatcgccccatttgacacttataaatccattgaa 8312204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 52640682 - 52641002
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||  |  |||||||||||||||||||     
T  52640682 aatatacaaccatcatcaaggaattgtgctaaaacatttctttctaatttaaaatattcatcactctaaaatatacaactagaacaaacacaagactcag 52640781  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataat 212  Q
    ||||||||||||||||| |||||   |||||||||| |||||||| | ||||| ||||||  |||||||||| |||||||||||||| ||| ||||||||    
T  52640782 gactcaatgttgatgcaaatgcatgaaatgcaaatataccatgattcagatatcgccccagttggcataatatttttaatcgccccaattgacatataat 52640881  T
Q  213 aaagaatcaccccatttggcatataataat-aatcatcccatctggcacttaaaaatcaattgaatcgccccatttggcacttaaaaatccattg-aatt 310  Q
    || ||||| ||||||||||||||||||||| |||| |||||| || ||  ||| |||      |||| ||||||||||||| ||||||||||||| |||     
T  52640882 aatgaatcgccccatttggcatataataataaatcgtcccatttgacatataataat------aatcaccccatttggcacctaaaaatccattgaaatc 52640975  T
Q  311 gccccatttgacatataataataatcg 337  Q
    |||||||||| | |||| |||||||||    
T  52640976 gccccatttggcctatagtaataatcg 52641002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 15989758 - 15990029
Alignment:
Q  21 accatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaagactcaat 120  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||  | |||||||||||||||||||||       |    
T  15989758 accatcatcaaggaattgtgctaaaacatttctttatagtttaaaatattcatcactctaaaatatactacaagaacaaacacaagactcaa-------t 15989850  T
Q  121 gttgatgcagatgca----atg-aatgcaaatagaccatgatccggatattgccccaactggcataatagtttt--aatcgccccatttggcatataata 213  Q
    |||||||||||||||    ||| ||||||| ||||||||||||||||||| ||||||  |||||||||||||||  |||||||||| |||||||||||||    
T  15989851 gttgatgcagatgcatggaatgcaatgcaagtagaccatgatccggatatcgccccagttggcataatagttttttaatcgccccagttggcatataata 15989950  T
Q  214 aagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattg-aatcgccccatttggca 291  Q
    | ||||| ||||||||||||||||||||||||   || || ||||||||||||||| |||| |||||||||||||||||    
T  15989951 atgaatcgccccatttggcatataataataattgccctatttggcacttaaaaatccattgaaatcgccccatttggca 15990029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 8655829 - 8655557
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||| |||||||||  ||||||||||||||||||   ||    
T  8655829 aatatacaaccatcatcaaggaattatgctaaaacatttctttttaatttaaaatatttatcactctaaaatataatataagaacaaacacaagatcgaa 8655730  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataat 212  Q
     ||||||||||||||||  || ||||    ||| |||||||| ||||| ||||  | | || || |||||||||||||||||||||||||| ||||||||    
T  8655729 aactcaatgttgatgca--tgaaatg----caagtagaccattatccgaatatcactc-aattgacataatagttttaatcgccccatttgacatataat 8655637  T
Q  213 aaagaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcg-ccccatttggca 291  Q
    || |||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||| ||||| ||||||||||||    
T  8655636 aatgaatcaccccatttggcatataataataatcacctcatttggcacttaaaaatccatttaatcgtccccatttggca 8655557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 40887974 - 40888252
Alignment:
Q  16 atacaaccatcatcaaggaattgtgctaaaaca-tttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaaga 114  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||| |||||||| |||||| ||||| ||   ||||||||||||||||||| ||| |    
T  40887974 atacaactatcatcaaggaattgtgctaaaataatttctttttagtttaaaatattgatcactataaaacatgctataagaacaaacacaagacccaa-a 40888072  T
Q  115 ctcaatgttg---atgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcatataa 211  Q
    ||||||||||   |||||||||||   |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||    
T  40888073 ctcaatgttggagatgcagatgcatgaaatgcaaacagaccatgatccggatatcgccccaattggcataatagttttaatcgcctcatttgacatataa 40888172  T
Q  212 taaagaatcaccccatttggcatataataataatcatcccatctggcactt-aaaaatcaattgaatcgccccatttggca 291  Q
    | || |||| ||||||||| || ||||||||||||  ||||| |||||||| ||||||| |||||||||||||| ||||||    
T  40888173 t-aataatcgccccatttgacacataataataatcgccccatttggcacttaaaaaatccattgaatcgccccaattggca 40888252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 19543996 - 19544187
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||||||||||||||||||||||||||||||| |||||  ||||||||  |||||||||||||| |||| ||||| ||||||||||||||||||| |||    
T  19543996 aatatacaaccatcatcaaggaattgtgctaaagcattt--ttttagttttaaatattcatcactctaaa-tatattataagaacaaacacaagacccaa 19544092  T
Q  113 gactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttggcata 208  Q
     |||||||||| |||||||||||   |||| || ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  19544093 tactcaatgttaatgcagatgcatgaaatgaaagtagac-atgatccggatatcgccccaattggcataatagttttaatcgccccatttgacata 19544187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 29454449 - 29454257
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacat-ttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactca 111  Q
    |||||||||||||||||||||||||||||||||| |  || ||||||||| |||||||||||| || ||||||||   |||||||||||||||||||  |    
T  29454449 aatatacaaccatcatcaaggaattgtgctaaaataaattatttttagtttaaaatattcatccctctaaaatatgctataagaacaaacacaagaccaa 29454350  T
Q  112 agactcaatgttgatg---cagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccattt 202  Q
    ||||||||||||||||   || |||||   ||||||| |||||||||||||| |||| ||||||| || |||||||||||||| | ||||||||    
T  29454349 agactcaatgttgatgatgcaaatgcatgaaatgcaa-tagaccatgatccgcatatcgccccaattgacataatagttttaaccaccccattt 29454257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 8655399 - 8655295
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggcacttaaaaatccattgaattgcccc 315  Q
    ||||| |||| ||||||||||||||||||||  ||| ||||||| ||||||||| |||||||| |||||||| |||||||||| || ||||||||| | |    
T  8655399 gaatcgccccttttggcatataataataatctccccgtctggcatttaaaaatccattgaatcaccccatttagcacttaaaattcaattgaattgtcac 8655300  T
Q  316 atttg 320  Q
    |||||    
T  8655299 atttg 8655295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 40888203 - 40888267
Alignment:
Q  275 aatcgccccatttggcacttaaaa-atccattgaattgccccatttgacatataataataatcgt 338  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||    
T  40888203 aatcgccccatttggcacttaaaaaatccattgaatcgccccaattggcatataataataatcgt 40888267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 9013786 - 9013836
Alignment:
Q  273 tgaatcgccccatttggcacttaaaaatccattgaattgccccatttgaca 323  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  9013786 tgaatcgccacatttgacacttaaaaatccattgaattgccccatttgaca 9013836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 9013803 - 9013865
Alignment:
Q  258 cacttaaaaatcaattgaatcgccccatttggcacttaaaaatccattgaattgccccatttg 320  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||| ||||||    
T  9013803 cacttaaaaatccattgaattgccccatttgacacttaaaaatccattgaatcgcctcatttg 9013865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 19544286 - 19544347
Alignment:
Q  274 gaatcgccccatttggcacttaaaaatccattgaattgccccatttgacatataataataatc 336  Q
    ||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  19544286 gaatcgccctatttgacacttaaaaatccattgaatcg-cccatttgacatataataataatc 19544347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 11649916 - 11650017
Alignment:
Q  105 agactcaagactcaatgttgatgcagatgcaatgaatgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttgg 204  Q
    |||| ||||||| |||||| |||||||||||   |||| || ||||||||||||| |||||  |||||| |||||||| | | |||||||||||||||||    
T  11649916 agacacaagactgaatgttaatgcagatgcatgaaatgtaactagaccatgatccagatatcaccccaattggcataaaaatattaatcgccccatttgg 11650015  T
Q  205 ca 206  Q
    ||    
T  11650016 ca 11650017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 52640972 - 52641053
Alignment:
Q  217 aatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggcacttaaaa 298  Q
    |||| ||||||||||| |||| ||||||||  ||||  |||||||| |||||| ||||||||| | ||||||||||||||||    
T  52640972 aatcgccccatttggcctatagtaataatcgccccagttggcacttgaaaatccattgaatcgtctcatttggcacttaaaa 52641053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 15989984 - 15990043
Alignment:
Q  279 gccccatttggcacttaaaaatccattg-aattgccccatttgacatataataataatcg 337  Q
    |||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  15989984 gccctatttggcacttaaaaatccattgaaatcgccccatttggcatatagtaataatcg 15990043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 8655516 - 8655455
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaat 277  Q
    ||||| ||||||||| |||||||||||||||| || || || |||||||||||| |||||||    
T  8655516 gaatcgccccatttgacatataataataatcaccctatttgacacttaaaaatccattgaat 8655455  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 8655598 - 8655545
Alignment:
Q  283 catttggcacttaaaaatccattgaattg-ccccatttgacatataataataat 335  Q
    ||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||    
T  8655598 catttggcacttaaaaatccatttaatcgtccccatttggcatataataataat 8655545  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 11649778 - 11649822
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttcttttt 57  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||    
T  11649778 aatatacaactgtcatcaaggaattgtgctaagacatttcttttt 11649822  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 8655424 - 8655369
Alignment:
Q  281 cccatttggcacttaaaaatccattgaattgccccatttgacatataataataatc 336  Q
    |||||||||| ||| ||| |||||||||| ||||| |||| |||||||||||||||    
T  8655424 cccatttggcgcttgaaagtccattgaatcgccccttttggcatataataataatc 8655369  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 8655451 - 8655382
Alignment:
Q  222 ccccatttggcatataataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggca 291  Q
    |||||||| |||||||||| ||| | |||||| |||| ||| ||| || ||||||||||||| |||||||    
T  8655451 ccccatttagcatataatagtaaccgtcccatttggcgcttgaaagtccattgaatcgccccttttggca 8655382  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 19544344 - 19544410
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattga----attgccccatttgacatataataataatcg 337  Q
    |||| ||| ||||| ||||||||||| ||||||    || |||||||||||||||||||||||||||    
T  19544344 aatcacccaatttgacacttaaaaattcattgatcgaatagccccatttgacatataataataatcg 19544410  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 29454144 - 29454111
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaa 308  Q
    |||||||||||||||||||||| |||||||||||    
T  29454144 aatcgccccatttggcacttaagaatccattgaa 29454111  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 40888235 - 40888284
Alignment:
Q  216 gaatcaccccatttggcatataataataatcatcccatctggcacttaaa 265  Q
    ||||| ||||| ||||||||||||||||||| ||| || |||||||||||    
T  40888235 gaatcgccccaattggcatataataataatcgtccaatttggcacttaaa 40888284  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 8655489 - 8655433
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattg-ccccatttgacatataata 330  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||||||  |||||||||    
T  8655489 aatcaccctatttgacacttaaaaatccattgaattgtccccatttagcatataata 8655433  T

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Target: scaffold0028 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 147821 - 148010
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||| ||||||||||| ||||||  |||||| |||||| |||||| || ||||||||||||||| |||||||||  ||| |||||||||||| ||| |     
T  147821 aatatgcaaccatcatctaggaatcctgctaagacatttgtttttaatttaaaatattcatcactctaaaatatactatacgaacaaacacaaaactaat 147920  T
Q  113 gactcaatgttgatgcagatgcaatga-atgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttg 203  Q
     |||||||| ||||| |||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||||    
T  147921 aactcaatg-tgatgtagatgc-atgagatgcaagtagaccatgatccggatatcgccccaattggcataatagttttaatcgtcacatttg 148010  T

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Target: scaffold0028; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 148102 - 148170
Alignment:
Q  236 taataataatcatcccatctggcacttaaaaatcaattgaatcgccccatttggcacttaaaaatccat 304  Q
    |||||||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||| |||||||    
T  148102 taataataatcaccccatttggcacttaaagatccagtgaatcgccccatttggcacttaataatccat 148170  T

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Target: scaffold0028; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 148109 - 148154
Alignment:
Q  275 aatcgccccatttggcacttaaaaatccattgaattgccccatttg 320  Q
    |||| |||||||||||||||||| ||||| ||||| ||||||||||    
T  148109 aatcaccccatttggcacttaaagatccagtgaatcgccccatttg 148154  T

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Target: scaffold0028; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 148012 - 148064
Alignment:
Q  283 catttggcacttaaaaatccattgaattgccccatttgacatataataataat 335  Q
    ||||| ||||||||||||||||||||| |||||||| | | ||||| ||||||    
T  148012 cattttgcacttaaaaatccattgaatcgccccattcggcgtataaaaataat 148064  T

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Target: scaffold0150 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 35189 - 35378
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttctttttagttcaaaatattcatcactttaaaatatatcataagaacaaacacaagactcaa 112  Q
    ||||| ||||||||||| ||||||  |||||| |||||| |||||| || ||||||||||||||| |||||||||  ||| |||||||||||| ||| |     
T  35189 aatatgcaaccatcatctaggaatcctgctaagacatttgtttttaatttaaaatattcatcactctaaaatatactatacgaacaaacacaaaactaat 35288  T
Q  113 gactcaatgttgatgcagatgcaatga-atgcaaatagaccatgatccggatattgccccaactggcataatagttttaatcgccccatttg 203  Q
     |||||||| ||||| |||||| |||| |||||| ||||||||||||||||||| ||||||| || ||||||||||||||||| | ||||||    
T  35289 aactcaatg-tgatgtagatgc-atgagatgcaagtagaccatgatccggatatcgccccaattgacataatagttttaatcgtcacatttg 35378  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 18926527 - 18926571
Alignment:
Q  13 aatatacaaccatcatcaaggaattgtgctaaaacatttcttttt 57  Q
    ||||||||||||||||||| ||||| || |||| |||||||||||    
T  18926527 aatatacaaccatcatcaaagaattatgataaaccatttcttttt 18926571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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