View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6528_high_2 (Length: 382)

Name: NF6528_high_2
Description: NF6528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6528_high_2
NF6528_high_2
[»] chr7 (7 HSPs)
chr7 (1-241)||(26618451-26618689)
chr7 (1-287)||(26607885-26608168)
chr7 (1-241)||(26620423-26620653)
chr7 (310-369)||(26608209-26608268)
chr7 (313-365)||(26620744-26620796)
chr7 (1-239)||(8248594-8248816)
chr7 (313-369)||(26618754-26618810)
[»] chr8 (4 HSPs)
chr8 (1-234)||(6223888-6224119)
chr8 (84-241)||(17633856-17634012)
chr8 (313-354)||(14998069-14998110)
chr8 (313-354)||(6223816-6223857)
[»] chr4 (5 HSPs)
chr4 (4-237)||(37744396-37744628)
chr4 (15-241)||(37750312-37750540)
chr4 (4-240)||(24558346-24558580)
chr4 (313-354)||(37750605-37750646)
chr4 (313-354)||(37744710-37744751)
[»] chr1 (6 HSPs)
chr1 (1-241)||(39367448-39367685)
chr1 (12-241)||(18308748-18308975)
chr1 (168-241)||(17113481-17113554)
chr1 (313-354)||(39367766-39367807)
chr1 (321-352)||(18308605-18308636)
chr1 (325-354)||(17113383-17113412)
[»] chr2 (6 HSPs)
chr2 (1-226)||(27150560-27150783)
chr2 (4-239)||(7702996-7703226)
chr2 (4-239)||(24479709-24479942)
chr2 (164-239)||(31481317-31481392)
chr2 (313-354)||(27150853-27150894)
chr2 (63-147)||(40016936-40017022)
[»] chr6 (3 HSPs)
chr6 (4-240)||(24631564-24631796)
chr6 (1-239)||(1943129-1943365)
chr6 (164-243)||(30129181-30129259)
[»] chr5 (2 HSPs)
chr5 (1-153)||(31571518-31571671)
chr5 (324-354)||(31571466-31571496)
[»] chr3 (1 HSPs)
chr3 (1-211)||(25338455-25338663)
[»] scaffold0002 (1 HSPs)
scaffold0002 (15-232)||(445602-445816)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26618451 - 26618689
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26618451 ctgttcagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 26618550  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  26618551 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttg--tttttgctctcacattccttctaaatacttgcagctagaagactt 26618648  T
Q  201 ttgttgtttcaaatgaagctatgaaagatggtgttgcaagc 241  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  26618649 ttgttgtttcaagtgaaactatgaaagatggtgttgcaagc 26618689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 26607885 - 26608168
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| || |||||||||||||||||||| |||||||    
T  26607885 ctgttctggaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtagaggtaaattctgctctatctttatatctcattttttta 26607984  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
     ||| |||||||||| ||||| |||||||||| | ||||||||||||||||||          ||||||||||||||| |||||||||||||||||||||    
T  26607985 ttgattgttggatttggttcaatcatttatacgt-aaatttacttttattttgtttttgct--ctcacattccttctacatacttgcagctagaagactt 26608081  T
Q  201 ttgttgtttcaaatgaagctatgaaagatggtgttgcaagctttaaatttgcttataaaaaacatttctagatcccctcatggctaa 287  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26608082 ttgttgtttcaaatgaagctatgaaagatggtgttgcaagcttgaaatttgcttataaaaaacatttctagatcccctcatggctaa 26608168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26620423 - 26620653
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttca-tctctagcagaggtaagttatgctctatctttatatctcaatttttt 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||| ||| |||||||| ||||||| ||||||||||  ||||||||||    
T  26620423 ctgttcataaagtagcaacacttaaatcaataggattttgttgcttgtttcaatctttagtagaggtaaattatgctttatctttataaatcaatttttt 26620522  T
Q  100 agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagact 199  Q
             ||||||| ||||| |||||||||||||||||||||||| ||||||          ||||||||||||||||||||||||||||||||||||    
T  26620523 ---------tggatttggttcaatcatttatacctcaaatttactttgattttgtttttgct--ctcacattccttctaaatacttgcagctagaagact 26620611  T
Q  200 tttgttgtttcaaatgaagctatgaaagatggtgttgcaagc 241  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  26620612 tttgttgtttcaaatgaagctatgaaagatgatgttgcaagc 26620653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 26608209 - 26608268
Alignment:
Q  310 ggtgaaaaaatgattattactaggtttagttaggatatcttatttgtagtattttgattt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26608209 ggtgaaaaaatgattattactaggtttagttaggatatcttatttgtagtattttgattt 26608268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 26620744 - 26620796
Alignment:
Q  313 gaaaaaatgattattactaggtttagttaggatatcttatttgtagtattttg 365  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26620744 gaaaaagtgattattactaggtttagttaggatatcttatttgtagtattttg 26620796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8248816 - 8248594
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttt- 99  Q
    ||||||| ||||||||||| ||||||  ||||||||||||||  ||||||      ||  | |||||| || ||||| || ||||||||| ||||||||     
T  8248816 ctgttcacaaagtagcaacccttaaagtaataggattttgtttcttgcttt-----taataaaggtaaattctgctccatttttatatcttaattttttt 8248722  T
Q  100 -agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagac 198  Q
     || || | ||||||||  |||| ||| ||||||||||||||||||||||||             |||||||| |||||||||||||||||||||||||     
T  8248721 tagcgattattggatttgtttcaatcacttatacctcaaatttacttttatt-------------ctcacattacttctaaatacttgcagctagaagat 8248635  T
Q  199 ttttgttgtttcaaatgaagctatgaaagatggtgttgcaa 239  Q
     ||||||| | ||| ||||||||| ||||||| | ||||||    
T  8248634 atttgttgctccaagtgaagctattaaagatgttattgcaa 8248594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 26618754 - 26618810
Alignment:
Q  313 gaaaaaatgattattactaggtttagttaggatatcttatttgtagtattttgattt 369  Q
    |||||| |||||||| |||||||| |  |||||||||||||||||||||||||||||    
T  26618754 gaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgattt 26618810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6224119 - 6223888
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||| | |||||| || ||||| ||||||||||||||||||||||    
T  6224119 ctgttcaaaaagtagcaacacttaaatcaatatgattttgttgcttgcttcatctttagtaaaggtaaattctgctccatctttatatctcaatttttta 6224020  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||||||          | || ||||||||||||||||||||||||||||||||    
T  6224019 gtgattgttggatttggttcaatcatttatacctcaaatttacttttattttg--tttttgttcccatattccttctaaatacttgcagctagaagactt 6223922  T
Q  201 ttgttgtttcaaatgaagctatgaaagatggtgt 234  Q
    |||||||||| |  ||||||||||||||||||||    
T  6223921 ttgttgtttcgagagaagctatgaaagatggtgt 6223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 17633856 - 17634012
Alignment:
Q  84 tatatctcaatttttt-agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaata 182  Q
    |||||||||||||||| ||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||||          |||||||||||||||||||    
T  17633856 tatatctcaatttttttagtgattattggatttggttcaatcatttatacctaaaatttacttttactttgtttttgtt--ctcacattccttctaaata 17633953  T
Q  183 cttgcagctagaagacttttgttgtttcaaatgaagctatgaaagatggtgttgcaagc 241  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||    
T  17633954 cttgcagctagaagatttttgttgcttcaagtgaagttatgaaagatggtgttgcaagc 17634012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 14998110 - 14998069
Alignment:
Q  313 gaaaaaatgattattactaggtttagttaggatatcttattt 354  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  14998110 gaaaaagtgattattactaggtttagttaggatatcttattt 14998069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 6223857 - 6223816
Alignment:
Q  313 gaaaaaatgattattactaggtttagttaggatatcttattt 354  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  6223857 gaaaaagtgattattactgggtttagttaggatatcttattt 6223816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 37744396 - 37744628
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaa-ttttttagt 102  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||| | |||||| || ||| | |||||| |||||||| |||||||||    
T  37744396 ttcagaaagtagcaacacttaaatcaattggattttgtttcttgcttcatctttagtaaaggtaaattctgcaccatctttgtatctcaatttttttagt 37744495  T
Q  103 gaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactttt 202  Q
    || |||||||||  ||||| |||||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||||||||||||    
T  37744496 gattgttggattgggttcaatcatttatacctcaaatttacttttattttg--tttttgttctcacattccttctaaatacttgcacctagaagactttt 37744593  T
Q  203 gttgtttcaaatgaagctatgaaagatggtgttgc 237  Q
    ||||||||||  |||||||||||||||||||||||    
T  37744594 gttgtttcaagagaagctatgaaagatggtgttgc 37744628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 37750312 - 37750540
Alignment:
Q  15 gcaacacttaaatcaataggat----tttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttg 110  Q
    ||||||||||||| ||||||||    || |||  ||||||||||| ||  | |||||| || ||||| |||||||||||||||||||||||||| |||||    
T  37750312 gcaacacttaaattaataggatcgatttagttacttgcttcatctttactaaaggtaaattctgctccatctttatatctcaattttttagtgattgttg 37750411  T
Q  111 gatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttc 210  Q
    |||||  |||| | |||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37750412 gatttgattcaattatttatacctcaaatttacttttattttg--tttttgttctcacattccttctaaatacttgcaactagaagacttttgttgtttc 37750509  T
Q  211 aaatgaagctatgaaagatggtgttgcaagc 241  Q
     |  ||||||||||||||||||||| |||||    
T  37750510 cagagaagctatgaaagatggtgttacaagc 37750540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 24558346 - 24558580
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttat--gctctatctttatatctcaattttttag 101  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| || ||| | |||||| ||||  |||| |||||||||||||||| ||||||    
T  24558346 ttcagaaagtagcaacacttaaattaataggattttgttgcttgcttcacctttagtaaaggtaaattatatgctccatctttatatctcaatgttttag 24558445  T
Q  102 tgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttt 201  Q
     ||   |||||||| ||||| |||||||||||||||||||||||||||||||          |||||||||||||| ||||||| |||||| |||| |||    
T  24558446 agatcattggatttggttcaatcatttatacctcaaatttacttttattttg--tttttgtactcacattccttct-aatacttacagctaaaagatttt 24558542  T
Q  202 tgttgtttcaaatgaagctatgaaagatggtgttgcaag 240  Q
    ||||| ||||| || ||| |||||||||| |||||||||    
T  24558543 tgttgcttcaagtg-agcaatgaaagatgatgttgcaag 24558580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 37750605 - 37750646
Alignment:
Q  313 gaaaaaatgattattactaggtttagttaggatatcttattt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37750605 gaaaaaatgattattactaggtttagttaggatatcttattt 37750646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 37744710 - 37744751
Alignment:
Q  313 gaaaaaatgattattactaggtttagttaggatatcttattt 354  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  37744710 gaaaaagtgattattactaggtttagttgggatatcttattt 37744751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39367448 - 39367685
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| | ||| || || ||||| ||| |||||||||| | ||| |    
T  39367448 ctgttcagaaagtagcaacacttaaatcaataggattttgttggctgcttcatctttagtaaaggaaaattctgctccatc-ttatatctcattatttca 39367546  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||| |||||||||| || || | |||||||||||||||||||||||||||||          ||||||||||||||||||||||| |||||||||||||    
T  39367547 gtgattgttggatttggtacaattatttatacctcaaatttacttttattttg--tttttgttctcacattccttctaaatacttgtagctagaagactt 39367644  T
Q  201 ttgttgtttcaaatgaagctatgaaagatggtgttgcaagc 241  Q
    |||||||||| || |||||||||||| ||||||||||||||    
T  39367645 ttgttgtttccaaggaagctatgaaaaatggtgttgcaagc 39367685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 18308975 - 18308748
Alignment:
Q  12 gtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttgg 111  Q
    |||| |||||||  ||||||| ||||||| || ||||||||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| ||||||    
T  18308975 gtagaaacacttttatcaatatgattttgctgcttgcttcatctctagtaaaggtaaattctgctccatctttatatctcaatttcttagtgattgttgg 18308876  T
Q  112 atttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttca 211  Q
    |||| ||||| | |||||||||||||||||| |||||||| |          ||||||||| |||||||||||||||||||||||||||||||||| ||     
T  18308875 atttggttcaataatttatacctcaaatttatttttatttag--tttttgatctcacattcattctaaatacttgcagctagaagacttttgttgtatcc 18308778  T
Q  212 aatgaagctatgaaagatggtgttgcaagc 241  Q
    |  ||||||||||| |||||||||||||||    
T  18308777 agagaagctatgaaggatggtgttgcaagc 18308748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 17113554 - 17113481
Alignment:
Q  168 cattccttctaaatacttgcagctagaagacttttgttgtttcaaatgaagctatgaaagatggtgttgcaagc 241  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||    
T  17113554 cattccttttaaatacttgcagctagaagatttttgttgattcaaatgaagctatgaatgatgttgttgcaagc 17113481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 39367766 - 39367807
Alignment:
Q  313 gaaaaaatgattattactaggtttagttaggatatcttattt 354  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  39367766 gaaaaagtgattgttactaggtttagttaggatatcttattt 39367807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 352
Target Start/End: Complemental strand, 18308636 - 18308605
Alignment:
Q  321 gattattactaggtttagttaggatatcttat 352  Q
    ||||||||||||||||||||||||||||||||    
T  18308636 gattattactaggtttagttaggatatcttat 18308605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 17113412 - 17113383
Alignment:
Q  325 attactaggtttagttaggatatcttattt 354  Q
    ||||||||||||||||||||||||||||||    
T  17113412 attactaggtttagttaggatatcttattt 17113383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27150560 - 27150783
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||||||||| || |||||||||||||||||||||||||||| ||| ||||||| ||| | |||||| || ||||| ||||||||||||||||||||||    
T  27150560 ctgttcagaaattaacaacacttaaatcaataggattttgttgcttggttcatctttagtaaaggtaaattttgctccatctttatatctcaatttttta 27150659  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||| |||||||||| ||| | | |||||||||||||||||||||||||||||          |||||||| ||| ||||||||||||||||||||||||    
T  27150660 gtgattgttggatttggttaaattatttatacctcaaatttacttttattttg--tttttgttctcacatttcttttaaatacttgcagctagaagactt 27150757  T
Q  201 ttgttgtttcaaatgaagctatgaaa 226  Q
    |||||||||| |  ||||||||||||    
T  27150758 ttgttgtttccagagaagctatgaaa 27150783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 7703226 - 7702996
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtg 103  Q
    |||||||||||| |||| ||||||||||||||||||| |   |||||||||| ||| | |||||| || ||||| || |||||||||||||||| |||||    
T  7703226 ttcagaaagtagaaacatttaaatcaataggattttgct---tgcttcatctttagtaaaggtaaattctgctccatttttatatctcaattttctagtg 7703130  T
Q  104 aatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttg 203  Q
    | |||||||||| ||||| | |||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||||||||    
T  7703129 attgttggatttggttcaattatttatacctcaaatttacttttattttg--tttttgttctcacgttccttctaaatacttgcagctagaagacttttg 7703032  T
Q  204 ttgtttcaaatgaagctatgaaagatggtgttgcaa 239  Q
    ||||||| |  |||||||||||||||||| ||||||    
T  7703031 ttgtttccagagaagctatgaaagatggttttgcaa 7702996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 24479942 - 24479709
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtg 103  Q
    |||||||||||||||||  |||||||||| ||||  |||| ||||||||||| |||   || ||| || | ||  |||||||||||||||||||||||||    
T  24479942 ttcagaaagtagcaacatataaatcaatatgattaagttgcttgcttcatctttagttaagctaaattctactacatctttatatctcaattttttagtg 24479843  T
Q  104 aatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttg 203  Q
    | | ||||||||  |||| |||||||||||||||||||||||||| |||            ||| ||||| |||||||||||| ||||||||||||||||    
T  24479842 attattggatttgattcaatcatttatacctcaaatttacttttactttatttttgtta--tcatattccatctaaatacttgtagctagaagacttttg 24479745  T
Q  204 ttgtttcaaatgaagctatgaaagatggtgttgcaa 239  Q
    ||| ||||| ||||||||| ||||||||||||||||    
T  24479744 ttgcttcaagtgaagctataaaagatggtgttgcaa 24479709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 31481392 - 31481317
Alignment:
Q  164 ctcacattccttctaaatacttgcagctagaagacttttgttgtttcaaatgaagctatgaaagatggtgttgcaa 239  Q
    ||||||||||||||||||||||| || ||||||| |||| ||| || || ||||||||  ||||||||||||||||    
T  31481392 ctcacattccttctaaatacttgtagttagaagaatttttttgcttaaagtgaagctaataaagatggtgttgcaa 31481317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 27150853 - 27150894
Alignment:
Q  313 gaaaaaatgattattactaggtttagttaggatatcttattt 354  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  27150853 gaaaaagtgattattactaggtttatttaggatatcttattt 27150894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 40017022 - 40016936
Alignment:
Q  63 aggtaagttatgctctatctttatatctcaatttttt--agtgaatgttggatttagttcattcatttatacctcaaatttactttt 147  Q
    |||||| || || |||||||||| |||||||||||||  ||| | | ||| |||| ||||| ||||||||||||| |||||||||||    
T  40017022 aggtaaattttgttctatctttacatctcaattttttttagttattattgaatttggttcaatcatttatacctctaatttactttt 40016936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 24631564 - 24631796
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtg 103  Q
    |||||||||| ||||||||| ||||||||||||||||||  ||||||||||| ||| | |||||| || ||||| ||||||||||||||  |||||||||    
T  24631564 ttcagaaagttgcaacacttgaatcaataggattttgttccttgcttcatctttagtaaaggtaaattctgctccatctttatatctcagatttttagtg 24631663  T
Q  104 a--atgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttt 201  Q
    |   |||||||||| ||||| |||||||||||||||||||||||||| ||||          |||||||||||  |||||||||||||||||||||||||    
T  24631664 attgtgttggatttggttcaatcatttatacctcaaatttacttttaatttg----tttgtcctcacattcct--taaatacttgcagctagaagacttt 24631757  T
Q  202 tgttgtttcaaatgaagctatgaaagatggtgttgcaag 240  Q
    |||||  |||| |||||||| |||| |||||||||||||    
T  24631758 tgttgcctcaagtgaagctacgaaacatggtgttgcaag 24631796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1943365 - 1943129
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||| ||||||||| |||||||||||||||||  |||||||| ||| ||      ||| | |||||| || ||||| |||||||||||||||||||||     
T  1943365 ctgtttagaaagtagtaacacttaaatcaatagacttttgttgcttgtttt-----tagaaaaggtaaattctgctccatctttatatctcaattttttt 1943271  T
Q  101 --gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagac 198  Q
      |||| | |  ||||| ||||| ||| |||||||||||||||||||||||||||          |||||||||||||||||||||||| |||||||||     
T  1943270 ttgtgattatcagatttggttcaatcacttatacctcaaatttacttttattttg--tttgtgttctcacattccttctaaatacttgcggctagaagat 1943173  T
Q  199 ttttgttgtttcaaatgaagctatga---aagatggtgttgcaa 239  Q
     ||||||| | ||| |||| |||| |   |||||||||||||||    
T  1943172 atttgttgctccaagtgaaactattaattaagatggtgttgcaa 1943129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 30129181 - 30129259
Alignment:
Q  164 ctcacattccttctaaatacttgcagctagaagacttttgttgtttcaaatgaagctatgaaagatggtgttgcaagctt 243  Q
    |||||||||||||||||||||||||||||||||| |||||||  || |  ||||||||| ||||||||||||||||||||    
T  30129181 ctcacattccttctaaatacttgcagctagaaga-ttttgttactttaggtgaagctattaaagatggtgttgcaagctt 30129259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31571671 - 31571518
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||| | ||  ||||||||||||||||||||||    
T  31571671 ctgttcagaaagtggcaacacttaaatcaataggattttgttgtttgattcatctttagtaaaggtaagttcttctgcatctttatatctcaatttttta 31571572  T
Q  101 gtgaatgttggatttagttcattcatttata-cctcaaatttacttttattttg 153  Q
    |||| |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  31571571 gtgattgttggatttagttcaatcatttatacccccaaatttacttttattttg 31571518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 31571496 - 31571466
Alignment:
Q  324 tattactaggtttagttaggatatcttattt 354  Q
    |||||||||||||||||||||||||||||||    
T  31571496 tattactaggtttagttaggatatcttattt 31571466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 25338455 - 25338663
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||| || | ||| ||||||||||||||| |||||     
T  25338455 ctgtttagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtaaaggtaaattctactccatctttatatctcaaatttttt 25338554  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||| | |||||||| ||||| ||||||||||||  |||||||||||| ||||          |||||||| ||| ||||||||||||||||||||| ||    
T  25338555 gtgattattggatttggttcaatcatttatacctacaatttacttttactttg--tttttgttctcacatttcttttaaatacttgcagctagaagattt 25338652  T
Q  201 ttgttgtttca 211  Q
    |||||| ||||    
T  25338653 ttgttgcttca 25338663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 445602 - 445816
Alignment:
Q  15 gcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttggatt 114  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||| | | |||| || ||||| || ||||||| |||||||||| || ||| |||||||    
T  445602 gcaacacttaaatcaataagattttgttgtttgctttatctttagtaaaagtaaattttgctccat-tttatatttcaattttttggtaaatattggatt 445700  T
Q  115 tagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaaat 214  Q
    | |||||   |||||||||||||||||||||||||||||          || ||||||||||||||||||||||||||||||| | |||||| ||||| |    
T  445701 tggttcaaatatttatacctcaaatttacttttattttg--tttttgtgcttacattccttctaaatacttgcagctagaagattgttgttgcttcaagt 445798  T
Q  215 gaagctatgaaagatggt 232  Q
    |||||||| ||| |||||    
T  445799 gaagctataaaatatggt 445816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University