View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6528_low_1 (Length: 765)
Name: NF6528_low_1
Description: NF6528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6528_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 180 - 756
Target Start/End: Complemental strand, 52592800 - 52592224
Alignment:
| Q |
180 |
taatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccaaaaaccgtattttgt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52592800 |
taatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccgaaaaccgtattttgt |
52592701 |
T |
|
| Q |
280 |
attccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccatt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592700 |
attccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccatt |
52592601 |
T |
|
| Q |
380 |
gaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatcc |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592600 |
gaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatcc |
52592501 |
T |
|
| Q |
480 |
caaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttgttaccttacaattactacaatgaatctgtagcagaacaaaatgga |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592500 |
caaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttgttaccttacaattactacaatgaatctgtagcagaacaaaatgga |
52592401 |
T |
|
| Q |
580 |
atcaagtttaacacgcctataggcgacacagtgactatgcaatccattgatgagcattccaatgcttacaactctcatgtagatgagcaaagtatacaat |
679 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592400 |
atcaagtttaacatgcctataggcgacacagtgactatgcaatccattgatgagcattccaatgcttacaactctcatgtagatgagcaaagtatacaat |
52592301 |
T |
|
| Q |
680 |
gccaagagttatctcttaggctcgggacactactgccttccaatgcatctgtccctccatttcaataccagtataat |
756 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52592300 |
gccaagagttatctcttaggctcgggacactactgccttccaatgtatctgtccctccatttcaataccagtataat |
52592224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 52592977 - 52592866
Alignment:
| Q |
1 |
cccggatttgaataaatgataaccaaacagggaacaatccattatacaaataaattatgttcttatatgcttgaaatgctttgttttttatggttgaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52592977 |
cccggatttgaataaatgataaccaaacagggaacaatccattatacaaataaattctgttcttacatgcttgaaatgctttgttttttatggttgaaat |
52592878 |
T |
|
| Q |
101 |
tacactggtcac |
112 |
Q |
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|||||||||||| |
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| T |
52592877 |
tacactggtcac |
52592866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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