View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6528_low_3 (Length: 316)
Name: NF6528_low_3
Description: NF6528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6528_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 26607680 - 26607462
Alignment:
| Q |
30 |
tgaatttttacttataatagtgtccagatggtgtacttcaatgaacatcataactcccataatttcaacaagtaaagtagaggtgatgccaagattataa |
129 |
Q |
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| T |
26607680 |
tgaagttttacttataatagtgtccagatggtgtacttcaatgaatatcataactcccataatttcaacaagtaaagtagaggtgatgccaagattataa |
26607581 |
T |
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| Q |
130 |
gcaaaaaaccctaaagtggcagaaaaatatctttaaaattctactgaaagcatcttgtccaggagtaccattggttgcaccatcattactgcactttatc |
229 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26607580 |
gcaaaaaaaccctaagtggcagaaaaatatctttaaaattctactgaaagcatcttgtcctggagtaccattggttgcaccatcattactgcactttatc |
26607481 |
T |
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| Q |
230 |
caaaaagcctagcgatgat |
248 |
Q |
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||| |||| |||||||||| |
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| T |
26607480 |
caacaagcatagcgatgat |
26607462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 33 - 295
Target Start/End: Complemental strand, 26618253 - 26617990
Alignment:
| Q |
33 |
atttttacttataatagtgtccagatggtgtacttcaatgaacatcataactcccataatttcaacaagtaaagtagaggtgatgccaagattataagca |
132 |
Q |
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||||||| |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
26618253 |
atttttatttataatagtgtccggatggtgtacttcaataaatatcataactccgataatttcaacatataaagcagaggtgataccaagattataagca |
26618154 |
T |
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| Q |
133 |
aaaaaccctaaagtggcagaaaaatatctttaaaattctactgaaagcatcttgtccaggagtacc-attggttgcaccatcattactgcactttatcca |
231 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
26618153 |
aaaaaccctaaaatggcagcaaaatatctttaaaattctactacaagcatctagtccaggagtaccaattggctgcaccatcattactgcactttatcca |
26618054 |
T |
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| Q |
232 |
aaaagcctagcgatgataccagaaaacttctttgatatttggagccttgggatgatgaatgcaa |
295 |
Q |
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| T |
26618053 |
ataagccttgcgatgataccagaaaacctctttaatatttggagctttgggatgatgaatgcaa |
26617990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 26620218 - 26620037
Alignment:
| Q |
30 |
tgaatttttacttataatagtgtccagatggtgtacttcaatgaacatcataactcccataatttcaacaagtaaagtagaggtgatgccaagattataa |
129 |
Q |
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|
||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
26620218 |
tgaatttttacttataatagtgttcggatggtgtacttcaatgaatatcataactcccataatttcaaaaagtaaagcagaggtgatgccaagattataa |
26620119 |
T |
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| Q |
130 |
gcaaaaaaccctaaagtggcagaaaaatatctttaaaattctactgaaagcatcttgtccaggagtaccattggttgcacca |
211 |
Q |
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||||||||||||||| |||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
26620118 |
gcaaaaaaccctaaaatggcagcaaaatatctctaaaattctactacaagcatctagtccaggagtaccattggttgcacca |
26620037 |
T |
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