View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6528_low_6 (Length: 222)

Name: NF6528_low_6
Description: NF6528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6528_low_6
NF6528_low_6
[»] chr2 (6 HSPs)
chr2 (40-205)||(31615415-31615580)
chr2 (40-204)||(36204180-36204338)
chr2 (131-206)||(18747297-18747371)
chr2 (131-181)||(19378221-19378271)
chr2 (40-94)||(3552527-3552582)
chr2 (135-205)||(25410605-25410674)
[»] chr6 (6 HSPs)
chr6 (40-205)||(30230448-30230606)
chr6 (135-205)||(2900535-2900605)
chr6 (131-205)||(8839121-8839194)
chr6 (44-178)||(6002403-6002532)
chr6 (134-182)||(7318428-7318476)
chr6 (131-179)||(15915858-15915906)
[»] chr4 (6 HSPs)
chr4 (40-205)||(25940047-25940205)
chr4 (40-182)||(32494935-32495071)
chr4 (131-205)||(24522496-24522570)
chr4 (131-206)||(25125361-25125431)
chr4 (134-199)||(7620527-7620592)
chr4 (131-168)||(36756049-36756086)
[»] chr5 (3 HSPs)
chr5 (40-176)||(6363478-6363608)
chr5 (133-205)||(32718246-32718317)
chr5 (135-191)||(43397876-43397932)
[»] chr7 (2 HSPs)
chr7 (40-198)||(33440368-33440521)
chr7 (135-205)||(38737495-38737565)
[»] chr8 (5 HSPs)
chr8 (134-205)||(27766472-27766542)
chr8 (40-206)||(12837990-12838149)
chr8 (146-205)||(29959770-29959828)
chr8 (40-180)||(27287018-27287153)
chr8 (135-171)||(36017131-36017167)
[»] chr3 (1 HSPs)
chr3 (131-181)||(9121268-9121318)
[»] chr1 (3 HSPs)
chr1 (131-212)||(47309470-47309550)
chr1 (131-198)||(40214140-40214207)
chr1 (131-205)||(9885846-9885919)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 31615580 - 31615415
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttgtggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaagac 139  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  31615580 aaagggtcgtttagcttgctgctaatgttgcaggaagttgtggtacatgacccgcctcacagtggactgaaggttcaatcatcaattactgatcgaagac 31615481  T
Q  140 ctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31615480 ctttaattagttctaggattaattagaggttgttacacttgtgcgttattttaacattttgtatca 31615415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 36204338 - 36204180
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttg-tggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaaga 138  Q
    ||||||||||||| |||| ||| | |||||||||||| || |||||||||| || ||||  ||| ||| || |||||||||| |        ||||||||    
T  36204338 aaagggtcgtttaacttgttgccattgttgcagggagctgatggtacatgaaccacctctgtgttgaccgagggttcaatcaccgc------atcgaaga 36204245  T
Q  139 cctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatc 204  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||| |||| | ||||||||||    
T  36204244 cctttaattagttttaggattaattagaggttgatacacttgtgtgttgttttta-tttttgtatc 36204180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 18747297 - 18747371
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatcat 206  Q
    ||||||||||| ||||| |||||||| |||||||||||||| ||||||| || ||| |||| | ||||||||||||    
T  18747297 atcgaagacctctaatttgttttaggattaattagaggttgatacacttatgtgttgttttta-tttttgtatcat 18747371  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 19378221 - 19378271
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgt 181  Q
    |||||||| |||||||||| |||||| |||||||||||||| |||||||||    
T  19378221 atcgaagatctttaattagctttaggattaattagaggttgatacacttgt 19378271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 3552527 - 3552582
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttg-tggtacatgacccgc 94  Q
    ||||||| |||||||||||||| | ||||||||||||||| |||||||||| ||||    
T  3552527 aaagggttgtttagcttgctgccattgttgcagggagttgatggtacatgaaccgc 3552582  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 25410674 - 25410605
Alignment:
Q  135 aagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    ||||||||||||| |||||||| |||||||||||||  |||| | ||| ||| |||||| |||||||||||    
T  25410674 aagacctttaattggttttaggattaattagaggttaatacattcgtgtgttgttttaa-tttttgtatca 25410605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 30230606 - 30230448
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttgtggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaagac 139  Q
    |||||||| ||||||||||||| | ||||||||||||||| |||||||||    | ||| ||| |||||| ||||||||||       || |||||||||    
T  30230606 aaagggtcatttagcttgctgccattgttgcagggagttgaggtacatgaaaatcttcagtgttgactgagggttcaatca-------ccgatcgaagac 30230514  T
Q  140 ctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  30230513 ctttaattagttttagggttaattagaggttgatacacttgtgtgttattttaaatttttgtatca 30230448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 2900605 - 2900535
Alignment:
Q  135 aagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||| |||  ||| | |||||||||||    
T  2900605 aagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatca 2900535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 8839194 - 8839121
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    ||||||||  ||||||||||||||||  ||||||||||||| |||||||||| ||| |||| | |||||||||||    
T  8839194 atcgaagatttttaattagttttaggaataattagaggttgatacacttgtgtgttgttttta-tttttgtatca 8839121  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 6002532 - 6002403
Alignment:
Q  44 ggtcgtttagcttgctgctaatgttgcagggagttg-tggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaagacctt 142  Q
    |||||||||||||||||  | || |||||||||||| |||||||||| |||||||  ||| ||| || |||||||||| ||       ||||||   |||    
T  6002532 ggtcgtttagcttgctgacattgctgcagggagttgatggtacatgaaccgcctccgtgttgaccgagggttcaatcacca------catcgaaactctt 6002439  T
Q  143 taattagttttagggttaattagaggttgttacact 178  Q
    |||||||||||||  |||||||||||||| ||||||    
T  6002438 taattagttttagcattaattagaggttgatacact 6002403  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 7318428 - 7318476
Alignment:
Q  134 gaagacctttaattagttttagggttaattagaggttgttacacttgtg 182  Q
    |||||||||| |||||||||||| ||||||||||| || | ||||||||    
T  7318428 gaagacctttgattagttttaggattaattagaggatgatccacttgtg 7318476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 15915906 - 15915858
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacactt 179  Q
    |||||||||||||||||||||||  | ||||| |||||||| |||||||    
T  15915906 atcgaagacctttaattagtttttagattaataagaggttgatacactt 15915858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 25940205 - 25940047
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttgtggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaagac 139  Q
    |||||||  ||||||||||| | | ||||||||||||||| ||||||||| || | ||| ||| |||||| ||||||||||       || |||||||||    
T  25940205 aaagggttatttagcttgctaccattgttgcagggagttgaggtacatgaacctcttcagtgttgactgagggttcaatca-------ccgatcgaagac 25940113  T
Q  140 ctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||||| ||||| |||||    
T  25940112 ctttaattagttttagggttaattagaagttgatacacttgtgtgttattttaaatttttatatca 25940047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 32495071 - 32494935
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttgtggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaagac 139  Q
    ||||||| ||||||||||||||   ||||||||||||||| ||||||||| |||||||| ||| ||| || |||||||||| ||       || ||||||    
T  32495071 aaagggttgtttagcttgctgcctttgttgcagggagttgaggtacatgaaccgcctcagtgttgaccgagggttcaatcacca------cattgaagac 32494978  T
Q  140 ctttaattagttttagggttaattagaggttgttacacttgtg 182  Q
    ||||| ||| ||||||| |||| ||||||||| ||||||||||    
T  32494977 ctttatttaattttaggattaactagaggttgatacacttgtg 32494935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 24522496 - 24522570
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    ||||||||| |||||||||||||||| ||||||||||||||  ||||||||  ||| |||| | |||||||||||    
T  24522496 atcgaagacttttaattagttttaggattaattagaggttgacacacttgtctgttgtttttattttttgtatca 24522570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 25125431 - 25125361
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatcat 206  Q
    ||||||||||||||||||||    || |||| ||||||||| |||||||||| ||| |||||| ||||||||||||    
T  25125431 atcgaagacctttaattagt----ggattaactagaggttgatacacttgtgtgttgttttaa-tttttgtatcat 25125361  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 7620592 - 7620527
Alignment:
Q  134 gaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaacttttt 199  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||||| || | ||| |||||| |||||    
T  7620592 gaagaccttcaattagttttaggattaattagaagttgatacacctgcgtgttgttttaatttttt 7620527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 36756049 - 36756086
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagagg 168  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  36756049 atcgaagatctttaattagttttaggattaattagagg 36756086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 6363608 - 6363478
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttgtggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaagac 139  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| |||| ||| | |||||||||||||||       |  |||||| ||    
T  6363608 aaagggtcgttaagcttgctgccaatgttgcagggagttgaggtacatgaaccggctcagtgttggctgaaggttcaatca------ccgcatcgaaaac 6363515  T
Q  140 ctttaattagttttagggttaattagaggttgttaca 176  Q
    ||||||||||||||| | ||||||| |||||| ||||    
T  6363514 ctttaattagttttatgattaattataggttgataca 6363478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 32718317 - 32718246
Alignment:
Q  133 cgaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||| ||| || ||| |||||||||||    
T  32718317 cgaagacctttaattagttttaggattaattagaggttgatacacttgtgtgttgttataa-tttttgtatca 32718246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 43397932 - 43397876
Alignment:
Q  135 aagacctttaattagttttagggttaattagaggttgttacacttgtgcgttatttt 191  Q
    ||||||| || ||||||||||| ||||||||| |||| |||||||||| ||| ||||    
T  43397932 aagacctgtagttagttttaggattaattagaagttgatacacttgtgtgttttttt 43397876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 33440368 - 33440521
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttgt-ggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaaga 138  Q
    ||||||||||||| |||||||||| ||||| |||||||||  ||||||||| |||||||  ||| ||| || |||||||||| |        ||||||||    
T  33440368 aaagggtcgtttaacttgctgctattgttgtagggagttgaaggtacatgaaccgcctccgtgttgacagagggttcaatcaccgc------atcgaaga 33440461  T
Q  139 cctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttt 198  Q
    |||||| ||||||||||| |||||||||||||| ||||||| || ||| |||||| ||||    
T  33440462 cctttagttagttttaggattaattagaggttgatacacttttgtgttgttttaattttt 33440521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 38737495 - 38737565
Alignment:
Q  135 aagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||||  || |||||| ||||| |||||    
T  38737495 aagacctttaattagttttaagattaattagaggttgatacacttgtgtattgttttaattttttttatca 38737565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 27766542 - 27766472
Alignment:
Q  134 gaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| ||| ||| |||| | |||||||||||    
T  27766542 gaagacctttaattagttttaggattaattagaggttgatacactcgtgtgttgttttta-tttttgtatca 27766472  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 206
Target Start/End: Original strand, 12837990 - 12838149
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttgtggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaagac 139  Q
    ||||||||||| |||||| ||| | ||||||||||||||| ||||||||| || ||  | ||| | |||| |||||||||||||       ||| |||||    
T  12837990 aaagggtcgttaagcttgatgcaattgttgcagggagttgaggtacatgaaccaccctagtgttggctgagggttcaatcatca------catcaaagac 12838083  T
Q  140 ctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatcat 206  Q
     |||||||||||||||| ||||||| || | | |||| || || ||| |||||| ||||||||||||    
T  12838084 ttttaattagttttaggattaattatagatcgatacaattatgtgttgttttaa-tttttgtatcat 12838149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 29959828 - 29959770
Alignment:
Q  146 ttagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    ||||||||||| |||||||||| ||| |||||||||| ||| |||||| |||||||||||    
T  29959828 ttagttttaggattaattagagattgatacacttgtgtgttgttttaa-tttttgtatca 29959770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 27287018 - 27287153
Alignment:
Q  40 aaagggtcgtttagcttgctgctaatgttgcagggagttg-tggtacatgacccgcctcactgtggactgaaggttcaatcatcaattaccaatcgaaga 138  Q
    |||||||||||||  ||| ||| | |||||||||||| || |||||||||| || ||||  ||| |||||| |||||||||| |        ||| ||||    
T  27287018 aaagggtcgtttaaattgatgccattgttgcagggagctgatggtacatgaaccacctccgtgttgactgagggttcaatcaccgc------atcaaaga 27287111  T
Q  139 cctttaattagttttagggttaattagaggttgttacacttg 180  Q
    | |||||||||||||||  |||||||||||||| ||||||||    
T  27287112 cttttaattagttttagaattaattagaggttgatacacttg 27287153  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 36017167 - 36017131
Alignment:
Q  135 aagacctttaattagttttagggttaattagaggttg 171  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  36017167 aagacctttagttagttttaggattaattagaggttg 36017131  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 9121268 - 9121318
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgt 181  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  9121268 atcgaagacttttaattagttttaggattaattagaggttgatacacttgt 9121318  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 47309550 - 47309470
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatcattcattt 212  Q
    ||||||||||||||||||| |||||  |||||||||   || |||||||||||||| |||||| ||||||||| || |||||    
T  47309550 atcgaagacctttaattagatttagaattaattagaatatgatacacttgtgcgttgttttaa-tttttgtattatccattt 47309470  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 40214140 - 40214207
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttt 198  Q
    |||||||| ||||| ||||||||||| ||||||  |||||| |||||||||| ||| |||||| ||||    
T  40214140 atcgaagatctttatttagttttaggattaattcaaggttgatacacttgtgtgttgttttaattttt 40214207  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 9885846 - 9885919
Alignment:
Q  131 atcgaagacctttaattagttttagggttaattagaggttgttacacttgtgcgttattttaactttttgtatca 205  Q
    |||||| ||||| | ||||||||||| |||| ||||||||| ||||||||||  || |||||| |||||||||||    
T  9885846 atcgaaaaccttcatttagttttaggattaactagaggttgatacacttgtgtattgttttaa-tttttgtatca 9885919  T

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