View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_high_12 (Length: 266)
Name: NF6529_high_12
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 54001807 - 54002045
Alignment:
| Q |
28 |
tccaaaccaaatacaaactttgaaatatatcatccctcaattccatgcttatcttttaagcaattgccaagtctttggtttgcattctgttttgaataat |
127 |
Q |
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| T |
54001807 |
tccaaaccaaatacaaactttgaaatatatcatccctcaattccatgcttatcttttaagcaattgccaagtctttggtttgcattctgttttgaataat |
54001906 |
T |
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| Q |
128 |
agttatgaaaatactaatttggcaaaaaacaacaaaatctagaacaataagcattttgcaaattattggtgtaaacatctgaatttgaaattaaaacaga |
227 |
Q |
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| T |
54001907 |
agttatgaaaatactaatttggcaaaaaacaacaaaatctagaacaataagcattttgcaaattattggtgtaaacatctgaatttgaaattaaaacaga |
54002006 |
T |
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| Q |
228 |
aaattaaccaatatactttcttatctgatcaagaagaat |
266 |
Q |
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| T |
54002007 |
aaattaaccaatatactttcatatctgatcaagaagaat |
54002045 |
T |
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