View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6529_high_20 (Length: 241)
Name: NF6529_high_20
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38916350 - 38916133
Alignment:
| Q |
1 |
ctcggattctcataaaagatttgtcctaactagagctaattaatcacttggttaatttgagcttaaactagtaaaaattgaaagagttttacaccaaccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38916350 |
ctcggattctcataaaagatttgtcctaactagagctaattaatcacttggttaatttgagcttaaactagtaaaaattgaaagacttttacaccaaccc |
38916251 |
T |
|
| Q |
101 |
agattattcatttgtctcaagaataagccagttcaaatttaacataatatttgcatcatttttcagtttgacacgtacaacacaaaaatgaattccaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38916250 |
agattattcatttgtctcaagaataagccagttccaatttatcataatatttgcatcatttttcag-ttgacacgtacaacacaaaaatgaattccaaaa |
38916152 |
T |
|
| Q |
201 |
aatttcaatttcaccctaa |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38916151 |
aatttcaatttcaccctaa |
38916133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University