View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_1 (Length: 1000)
Name: NF6529_low_1
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 897; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 897; E-Value: 0
Query Start/End: Original strand, 18 - 983
Target Start/End: Complemental strand, 40188795 - 40187829
Alignment:
| Q |
18 |
ttcattacctaaaaaattctctagttttggtgctgaagtagtactcattgcttcacaaatatagataaaaataagtgggatcaaaattcaagaattttaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40188795 |
ttcattacctaaaaaattctctagttttggtgctgaagtagtactcattgcttcacaaatatagataaaaataagtgggatcaaaattcaagaattttaa |
40188696 |
T |
|
| Q |
118 |
caattagcatacactaacacacacataatacaacaaaaaactttgaactaaccttgtgtttgcgatctgctaagagcttccatttcataaagagatccat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |
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| T |
40188695 |
caattagcatacactaacacacacataatacaacaaaaaactttgaactaaccttgtgtttgtgacctgctaagagcttccatttcaaaaagagatccat |
40188596 |
T |
|
| Q |
218 |
cagatttgagaggcataatgggaagtaatgaatacaagccagcattttcatgttcaagtccataagagtaacaaaagttactaagaggtgaagaatggta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40188595 |
cagatttgagaggcataatgggaagtaatgaatacaagccagcattttcatgttcaagtccataagagtaacaaaagttactaagaggtgaagaatggta |
40188496 |
T |
|
| Q |
318 |
aaagcttgcttgaagtggaactacttcagaagcagtagcagtagcagaaggtagtgaatgatgatgagtgtgagaagaaacaccaatattattcatttga |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40188495 |
aaagcttgcttgaagtggaactacttcagaagcagtagcagtagcagaaggtagtgaatgatgatgagtgtgtgaagaaacaccaatattattcatttga |
40188396 |
T |
|
| Q |
418 |
ggagagagtgaaaaacctaaccagttattttcattgttaatgtcaacactatcatcattgttttccattctcttcatattttctctcacaagataacaaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40188395 |
ggagagagtgaaaaacctaaccagttattttcattgttaatgtcaacactatcatcattgttttccattctcttcatattttctctcacaagataacaaa |
40188296 |
T |
|
| Q |
518 |
ataacaaggaaaatatgtctagaagcaatgcaactcaatcatatactaatcataccatatctaagtatctaaccaacaatgtaatgaaatatatctataa |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40188295 |
ataacaaggaaaatatgtctagaagcaatgcaactcaatcatatactaatcataccatatctaagtatctaacaaacaatgtaatgaaatatatctataa |
40188196 |
T |
|
| Q |
618 |
actctctttggtttttgtgtgccttagttagtatataagggtatatgtatatctaaagggaacaaagcaagttcctttaaactaaacaaaaagaatgtat |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40188195 |
actctctttggtttttgtgtgccttagttagtatataagggtatatgtatatctaaagggaacaaagcaagttcctttaaactaaacaaaaagaatgtat |
40188096 |
T |
|
| Q |
718 |
tccagcaagcaatgctaggccttcattctatggggatccgtgtatgagaaagaccttcacttttgctttattctacgctcctttcattccc-nnnnnnng |
816 |
Q |
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| T |
40188095 |
tccagcaagcaatgctaggccttcattctatggggatccgtgtatgagaaagaccttcacttttgctttattctacgctcctttcattcccttttttttg |
40187996 |
T |
|
| Q |
817 |
cttttgtgttaagagtgtgttctcacttatcacactcttttgtatgataataaataattgaaaaccctattggaaaatagttgttgtcatccnnnnnnng |
916 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40187995 |
cttttgtgttaagagtgtgttctcacttatcacactcttttgtatgataataaataattgaaaaccctattggaaaatagttgttgtcatccaaaaaaag |
40187896 |
T |
|
| Q |
917 |
acctgtgtgtttcaccaaaaaatggagaaggcagagaccacattcttgtatagtggatgcaacaagt |
983 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40187895 |
acctgtgtgtttcaccaaaaaatggagaaggcagagaccacattcttgtatagtggatgcaacaagt |
40187829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 750 - 798
Target Start/End: Original strand, 5179963 - 5180011
Alignment:
| Q |
750 |
gggatccgtgtatgagaaagaccttcacttttgctttattctacgctcc |
798 |
Q |
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|||||| |||| |||||||||| ||| |||||||||||||||||||||| |
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| T |
5179963 |
gggatctgtgtttgagaaagacattcccttttgctttattctacgctcc |
5180011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 23445856 - 23445931
Alignment:
| Q |
165 |
ctaaccttgtgtttgcgatctgctaagagcttccatttcataaagagatccatcagatttgagaggcataatgggaa |
241 |
Q |
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||||||| ||| ||| || ||||||| ||||||| ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
23445856 |
ctaacctcgtgcttgtgacctgctaaatgcttccacttcatttagagatccatcagatttgag-ggcataatgggaa |
23445931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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