View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_10 (Length: 308)
Name: NF6529_low_10
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 49364348 - 49364070
Alignment:
| Q |
18 |
tgttgcaattccaaatgctcaatcaatgcttcttctcctcatccacccttgttcattcccatcccctccaattttaattctgccttttccaaaccactta |
117 |
Q |
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| T |
49364348 |
tgttgcaattccaaatgctcaatcaatgcttcttctcctcatccacccttgttcattcccatcccctccaattttaattctgccttttccaaaccactta |
49364249 |
T |
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| Q |
118 |
ttatacacacacactcttcgaaaagtaacagctatgttgttcgtgctcaaaacaatcatcatcaagataatgatgatggattttatatgagaaaaagtgt |
217 |
Q |
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| T |
49364248 |
ttatacacacacactctccgaaaagtaacagctatgttgttcgtgctcaaaacaatcatcatcaagataatgatgatggattttatatgagaaaaagtgt |
49364149 |
T |
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| Q |
218 |
tgagctagctagaaaaggtttggggtataccagtcccaatccattagttggatgtgttattgtcaaacatgaaaatatt |
296 |
Q |
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| T |
49364148 |
tgagctagctagaaaaggtttggggtataccagtcccaatccattagttggatgtgttattgtcaaacatggaaatatt |
49364070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 1560699 - 1560589
Alignment:
| Q |
59 |
tccacccttgttcattcccatcccctccaattttaattctgccttttccaaaccacttattatacacacacactcttcgaaaagtaacagctatgttgtt |
158 |
Q |
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| T |
1560699 |
tccaccttcgttcattcgcagcccctccaattttaattatgccttttccaaaccacttattatgtatagacactcttgaaagaataacgactatgttgtt |
1560600 |
T |
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| Q |
159 |
cgtgctcaaaa |
169 |
Q |
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| T |
1560599 |
cgtgctcaaaa |
1560589 |
T |
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