View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_11 (Length: 304)
Name: NF6529_low_11
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 71 - 292
Target Start/End: Original strand, 9125979 - 9126198
Alignment:
| Q |
71 |
atgcaatgcaaatatcaaagttgcgcgtgaacattgtcatattattacattgtaaggtataaaccagctgtcaagtaaccttgcctcaacaggcaattgt |
170 |
Q |
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| T |
9125979 |
atgcaatgcaaatatcaaagttgagcgtgaacattgtcat--tattacattgtaaggtataaacgaactgtcaagtaaccttgccacaacatgcaattgt |
9126076 |
T |
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| Q |
171 |
catccttgtttgtatttcaatatggacgattccttttcccggttaaatctttcatttttctttatctacctcagagaaaacttcatgcttggtattcaag |
270 |
Q |
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| T |
9126077 |
catcgttgtttttatttcaatatagacgatttcttttcccggttaaatctttcatttttctttatctacctcggagaaaacttcatgcttgatattcaag |
9126176 |
T |
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| Q |
271 |
cactttatttataaatcaacat |
292 |
Q |
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||||||||| |||||||||||| |
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| T |
9126177 |
cactttattaataaatcaacat |
9126198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37114752 - 37114695
Alignment:
| Q |
1 |
ctgcacttgtatttggttctcaatatggaataggttacaatgattctacgatcggatg |
58 |
Q |
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| T |
37114752 |
ctgcacttgtatttggttctcaatatgtaatgggttacaatgattctccgatcggatg |
37114695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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