View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_14 (Length: 266)
Name: NF6529_low_14
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 11573214 - 11573010
Alignment:
| Q |
13 |
aatatcatagcagacnnnnnnntctatatttattagttttaaaaaattggagttagaaaaattactataattaatatgatgctaatgatggttttacaaa |
112 |
Q |
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| T |
11573214 |
aatatcatagcagacaaaaaaatctatatttattagttataaaaaattggagttagaaaaattactataattaatatgatgctaatgatggttttacaaa |
11573115 |
T |
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| Q |
113 |
ggaatttgaacttcatcctttgaaatataaagaatatattatatatttacaattgtaatgtagtttcaatctctattatgataagaaaaatgttgctttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11573114 |
ggaatttgaacttcatcctttgaaatataaagaataaattatatatttacaattgtaatgtagtttcaatctctattatgataagaaaaatgttgctttg |
11573015 |
T |
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| Q |
213 |
ctatt |
217 |
Q |
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||||| |
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| T |
11573014 |
ctatt |
11573010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 11572976 - 11572921
Alignment:
| Q |
211 |
tgctattacttgccatattccaaacatcagaaaactctttcaatttttcttcaaca |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11572976 |
tgctattacttgccatattccaaacatcagaaaactctttcaatttttcttcaaca |
11572921 |
T |
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