View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_16 (Length: 257)
Name: NF6529_low_16
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 38916809 - 38916569
Alignment:
| Q |
16 |
ataatactctggaaacgctcctgcaccattgggggtggcccttgtccttgtgcataggtaggaaaataaggcgaagatggaactcccaaatcctccctag |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38916809 |
ataacactctggaaacgctcctgcaccattgggggtggcccttgtccttgtgcataggtaggaaaataaggcgaagatggaactcccaaatcctccctag |
38916710 |
T |
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| Q |
116 |
aagaacacataattcaagtcaataaataagactaaagttaacagattaaacaaattaacaagcaaaaatctaccttatggaccaaataccctgacgtgaa |
215 |
Q |
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| T |
38916709 |
aagaacacataattcaagtcaataaataagactaaagttaacagattaaacaaattaacaagc-aaaatctaccttatggaccaaataccctgacgtgaa |
38916611 |
T |
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| Q |
216 |
ctcctctcaggtccccaaaattgatcaccatagacagctttc |
257 |
Q |
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| T |
38916610 |
ctcctctcatgtccccaaaattgatcaccatagaccgctttc |
38916569 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 44856548 - 44856645
Alignment:
| Q |
16 |
ataatactctggaaacgctcctgcaccattgggggtggcccttgtccttgtgcataggtaggaaaataaggcgaagatggaactcccaaatcctccct |
113 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||| |||||||| ||| |||||| ||||| |
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| T |
44856548 |
ataacactctggaaacgctcctgcaccattggtggtggtccttgtccttgtgcatgtacagggaaataaggagaagatgggacttgcaaatcttccct |
44856645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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