View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_17 (Length: 255)
Name: NF6529_low_17
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 54002356 - 54002108
Alignment:
| Q |
7 |
tagattatactaatgacaaatttgtttctgtaacgtattttggtatactttacatgtaatgtataagttgtttcaatgtagtatgagcttccttatctat |
106 |
Q |
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| T |
54002356 |
tagattatactaatgacaaatttgtttttgtaacgtattttggtatactttacatgtaatgtataagttgtttcaatgtagtatgagcttccttatctat |
54002257 |
T |
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| Q |
107 |
ctgttaatatttggcatggagatggatctaaataaacaagttctctgnnnnnnnnntgatctctggcaatcgcagattctggatgatcttttttcccctt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54002256 |
ctgttaatatttggcatggagatggatctaaataaacaagttctctgaaaaaaaaatgatctctggcaatcgcagattctgaatgatcttttttcccctt |
54002157 |
T |
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| Q |
207 |
caagttggcctattaaaattaatgacacgaggacctgccatgtaagttt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54002156 |
caagttggcctattaaaattaatgacacgaggacctaccatgtaagttt |
54002108 |
T |
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