View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_2 (Length: 517)
Name: NF6529_low_2
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 39975966 - 39975476
Alignment:
| Q |
18 |
catagcaccaataaaaacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975966 |
catagcaccaataaaaacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcct |
39975867 |
T |
|
| Q |
118 |
gaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975866 |
gaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtca |
39975767 |
T |
|
| Q |
218 |
gcatgttttatgggaccacagcaagcggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975766 |
gcatgttttatgggaccacagcaagcggattgaagtgtttggatcctatttttttcttgatgaatcctaagccaagttatcatattcaaattcttgggaa |
39975667 |
T |
|
| Q |
318 |
ggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtaca |
417 |
Q |
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| T |
39975666 |
ggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtaca |
39975567 |
T |
|
| Q |
418 |
aattttactaggagggataagtatatgatgcttgcagggaatgaagggattgttccacaagttagtaatttgaaaaaatgctattgatgat |
508 |
Q |
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| T |
39975566 |
aattttactaggagggataagtatatgatgcttgcagggaatgaagggattgttcaacaagttagtaatttgaaaaaatgctattgatgat |
39975476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 25552961 - 25552899
Alignment:
| Q |
112 |
tgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgag |
174 |
Q |
| |
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||||| ||||||||||| ||||||||||| || ||| ||||||||||| | |||||||||||| |
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| T |
25552961 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgag |
25552899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 38 - 464
Target Start/End: Complemental strand, 16147724 - 16147298
Alignment:
| Q |
38 |
tgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagaga |
137 |
Q |
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|||| |||||||| || ||| |||||||| | ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
16147724 |
tgagtttaacaagggatagagaacaagatagggaaacaatgcaaaggttgttaagtgaaggtgatttagttgtttgtcctgaaggaacaacttgtaggga |
16147625 |
T |
|
| Q |
138 |
accatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccaca |
237 |
Q |
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||| ||||| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||| |
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| T |
16147624 |
accttatttattaaggtttagttcactttttgctgaacttgctgatgagattgttccagtggctatgaatgttaatgtgagtatgttttatggtacaaca |
16147525 |
T |
|
| Q |
238 |
gcaagcggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacat |
337 |
Q |
| |
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|| || ||||| || |||||||| || ||||||||||| ||| |||||| ||||| || | |||| |||||||| |||||||| || | |
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| T |
16147524 |
gctagtggattaaaatgtttggactcttttctatttttgatgaatccatggcctagttataatattgaagtacttgaaaaggtaccaaaagaactcactt |
16147425 |
T |
|
| Q |
338 |
gtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataa |
437 |
Q |
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||||||| ||||| || | |||||||||||||||||||||| | | | |||||||||||||| ||||||||||||||||| |||| ||||||||||| |
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| T |
16147424 |
gtgctggtggaaaatctccttttgaagtggctaattatatacaaagagagttgggtgatgctttagggtttgagtgtacaaatattacaaggagggataa |
16147325 |
T |
|
| Q |
438 |
gtatatgatgcttgcagggaatgaagg |
464 |
Q |
| |
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||||||||| | || ||||||||||| |
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| T |
16147324 |
atatatgatgttagctgggaatgaagg |
16147298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 46 - 461
Target Start/End: Original strand, 16195219 - 16195634
Alignment:
| Q |
46 |
acaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatt |
145 |
Q |
| |
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|||||||||||| |||||||| | ||||||||||||| ||| || || ||||||||||||||||| || |||||||||||||| ||||| ||||| |||| |
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| T |
16195219 |
acaagagacagagaacaagatagggaaacaatgcaaaggttgcttagggaaggtgatttagttgtgtgccctgaaggaacaacttgtagggaaccttatt |
16195318 |
T |
|
| Q |
146 |
tgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcgg |
245 |
Q |
| |
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| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||||| || || |
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| T |
16195319 |
tattaaggtttagttcactttttgctgaaattgctgatgagattgttccagtggctatgaatgataatgtgagtatgttttatggtacaacagctagtgg |
16195418 |
T |
|
| Q |
246 |
attgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgctgga |
345 |
Q |
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||| || |||||||| ||| ||||||||||| |||||||||| | ||| |||| |||| || || || |||||||| || |||||||| |
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| T |
16195419 |
attaaaatgtttggacccttttctatttttgatgaatccatggccaagttataacattgaaatgcttgataaagttccaaaagaactcacttgtgctggt |
16195518 |
T |
|
| Q |
346 |
ggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagtatatga |
445 |
Q |
| |
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|||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||| | |||||||| || ||| |||| ||||||||||| ||||||| |
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| T |
16195519 |
ggaaagtctccttttgaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggataaatatatga |
16195618 |
T |
|
| Q |
446 |
tgcttgcagggaatga |
461 |
Q |
| |
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|| | || |||||||| |
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| T |
16195619 |
tgttagctgggaatga |
16195634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 50133656 - 50133706
Alignment:
| Q |
33 |
aacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaa |
83 |
Q |
| |
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|||||||||||||| ||| | ||||||| |||||||||||||||||||||| |
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|
| T |
50133656 |
aacagtgagattaataaggggcagaaaataagatggtgaaacaatgcaaaa |
50133706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 38792363 - 38792285
Alignment:
| Q |
95 |
aaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctga |
173 |
Q |
| |
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|||| ||| ||||||| ||||| ||||| || || ||||||||||| ||||| ||||||||||| || |||||| |||| |
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| T |
38792363 |
aaggggatgtagttgtgtgtccagaagggaccacttgtagagaaccttatttattaaggtttagctctttgttttctga |
38792285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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