View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_25 (Length: 214)
Name: NF6529_low_25
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 53499008 - 53498819
Alignment:
| Q |
15 |
tgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctg |
114 |
Q |
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| T |
53499008 |
tgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctg |
53498909 |
T |
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| Q |
115 |
ttgttgctcttatattctcacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
204 |
Q |
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| T |
53498908 |
ttgttgctcttatattctcacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 53491414 - 53491223
Alignment:
| Q |
15 |
tgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctg |
114 |
Q |
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| T |
53491414 |
tgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttg |
53491315 |
T |
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| Q |
115 |
ttgttgctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
204 |
Q |
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| T |
53491314 |
ttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 16070087 - 16069999
Alignment:
| Q |
22 |
aagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgt |
110 |
Q |
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| T |
16070087 |
aagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaatgttgt |
16069999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
27 |
ttctgaatgggaaatgaaaggcgtccctctaaggattga |
65 |
Q |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 45355367 - 45355440
Alignment:
| Q |
25 |
tattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggt |
98 |
Q |
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| T |
45355367 |
tattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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